Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17900 264 / 2e-89 PLATZ transcription factor family protein (.1.2) AT1G32700 250 / 4e-84 PLATZ transcription factor family protein (.1.2) AT1G76590 196 / 1e-62 PLATZ transcription factor family protein (.1) AT1G21000 196 / 2e-62 PLATZ transcription factor family protein (.1.2) AT5G46710 192 / 4e-61 PLATZ transcription factor family protein (.1) AT1G43000 184 / 4e-58 PLATZ transcription factor family protein (.1) AT2G27930 150 / 2e-45 PLATZ transcription factor family protein (.1) AT2G12646 137 / 2e-39 PLATZ transcription factor family protein (.1) AT3G60670 133 / 6e-38 PLATZ transcription factor family protein (.1) AT1G31040 121 / 2e-33 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004577 [exp] 379 / 2e-134 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 307 / 4e-106 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 302 / 3e-104 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 260 / 7e-87 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 207 / 8e-67 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 206 / 2e-65 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 197 / 1e-61 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 192 / 3e-61 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 190 / 3e-60 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092800 [exp] 308 / 9e-107 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 307 / 3e-106 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 275 / 1e-93 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 268 / 8e-91 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.005G259000 [exp] 211 / 2e-68 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 210 / 4e-68 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.016G097100 [exp] 197 / 1e-63 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 194 / 3e-62 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 186 / 6e-59 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 181 / 7e-57 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10000482 pacid=23142781 polypeptide=Lus10000482 locus=Lus10000482.g ID=Lus10000482.BGIv1.0 annot-version=v1.0 ATGGAAGAGGGGAATTTGGCAGAAAAGATTACCACTAATGAAACCAAATCATTGGAAGATGCTGCTGGAGGTCCGGATGAAGATGAAGGTAGGTGGCCAC CATGGTTGAAGCTGGTTTTAAGAGAGAGGTTCTTCGTTGAATGCAAAGAGCATGCTGATTCACACAAGAGTGAATGCAATATGTACTGCTTGGATTGTAT GGACGGCTCTCTCTGCTCTCTCTGCCTCTCCCATCATAAGGATCACAGTTTCATCCAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTGAACGAG ATACAGAAGGTTTTGGATATCTCTAATGTCCAGACCTATGTCATCAACAGTGCTCGGGTTATGTTCTTGAACGAGAGGCCTCAGCATAGGCCCGGAAAGG GTGTGACCAACACTTGCGAAGTCTGCGATCGTAGCCTCCTTGATTCCTTCCTGTTCTGCTCCCTTGGTTGCAAGGTTGTGGGGACATCCAAGAACTTCCA GACGAGGAACAGGAAGCAGTTTGCAGCGACGGGATCAGACTCTGAGGAATCATCCTACAGCAGCCATGGCCGTGGCGTTAGGAGGTACAAGAACAAGTAC AGCAATGGAAGCAGCGGCCATTTCAGCAGCATTGTTGATAAAGCTGAGAGCTTTTCGCCATCCACGCCACCTCCTACCTCGACGAGTTTCAGGACAGTGA AGCGGAGGAAGGGAATCCCTCATAGAGCTCCCATGGGAGGGCTCATCATAGAGTATTGA
AA sequence Show only first row Show all	>Lus10000482 pacid=23142781 polypeptide=Lus10000482 locus=Lus10000482.g ID=Lus10000482.BGIv1.0 annot-version=v1.0 MEEGNLAEKITTNETKSLEDAAGGPDEDEGRWPPWLKLVLRERFFVECKEHADSHKSECNMYCLDCMDGSLCSLCLSHHKDHSFIQIRRSSYHDVIRVNE IQKVLDISNVQTYVINSARVMFLNERPQHRPGKGVTNTCEVCDRSLLDSFLFCSLGCKVVGTSKNFQTRNRKQFAATGSDSEESSYSSHGRGVRRYKNKY SNGSSGHFSSIVDKAESFSPSTPPPTSTSFRTVKRRKGIPHRAPMGGLIIEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17900			PLATZ transcription factor fam...		Lus10000482 [exp]	0	1
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	2.4	0.9556
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	2.4	0.9591
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	7.2	0.9263
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10040814 [exp]	7.7	0.9360
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	7.7	0.9534
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	11.0	0.9479
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	12.0	0.9407
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10006864 [exp]	14.0	0.9162
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	15.6	0.9378
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10010695 [exp]	16.9	0.9335

Compare expression of checked genes

Lus10000482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.