Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32640 453 / 4e-152 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 242 / 1e-71 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 237 / 1e-69 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 170 / 8e-46 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT1G01260 121 / 1e-28 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G46510 113 / 3e-26 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G16430 107 / 2e-24 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00870 106 / 2e-24 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 96 / 2e-20 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G63650 86 / 4e-17 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004574 [exp] 803 / 0 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 608 / 0 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 584 / 0 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035366 [exp] 370 / 5e-122 AT1G32640 376 / 9e-125 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 247 / 7e-78 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035365 [exp] 154 / 1e-44 AT5G46760 129 / 7e-37 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 139 / 3e-35 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030243 [exp] 120 / 2e-28 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 119 / 5e-28 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092200 [exp] 309 / 5e-96 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 304 / 2e-94 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G176900 [exp] 151 / 3e-39 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 145 / 3e-37 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 140 / 8e-36 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 139 / 3e-35 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G221100 [exp] 113 / 3e-26 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 110 / 2e-25 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 110 / 6e-25 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 110 / 6e-25 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10000484 pacid=23142786 polypeptide=Lus10000484 locus=Lus10000484.g ID=Lus10000484.BGIv1.0 annot-version=v1.0 ATGAACCTCTGGACTGACGACAACGCATCAGTAATGGAAGCTTTCATGAACTCCGATCTCTCCTCCCTCTGGCCTCCTCCACCTCCAACTCCTCTCCTCC ACCACCACCAACCCTCATCCTCCTCCGCCGTCTCCACTTCCACTCCTCCGCCGGATCCCATCAGACCTTCCTCTGCCCCTGCCGGCGTCGCTTCCCAATC TCAGTCCCTCAACCAGGAGACTCTCCAGCAGCGTCTTCAGGCCTTAATCGACGGCGCTCGCGAGAACTGGACCTACGCGATCTTCTGGCAGTCGTCTTAC GATTTCTCCGGTGCCTCCGTTTTAGGATGGGGAGATGGATACTACAAGGGCGAGGACAAGGTGAAATCGGTTAAGAGAAATTTCAGCCCCGCGGAGCAGG AGCACCGGAAGAAGGTCCTCCGTGAGCTGAATTCATTGATCTCTGGCCCTAATTCGGCCTCCGACGACGTCGTCGACGGGGAGGTTACCGACACCGAGTG GTTCTTCCTTGTGTCGATGACGCAGTCGTTCGTCAACGGCGTCGGATTGCCGGGTCAGGCGTTCTTCAACGGCAGCCCTGTTTGGCTTGTTGGGTCGGAT CGTATGGCCTCTGCTCCCTGCGATCGGGCTAAGCAAGGTCAGGTCTTTGGCCTCCAGACGATCGTCTGTATACCGTCGGAAAACGGCGTTGTTGAGCTTG GCTCCACTGATTCCATCTTCCACAGCTCGGATCTGATGAATAAGCCGGAGGCGGAGCTGGTTCATCCTGGCCGCCGCCGCCTACTCCGAATCACGACCAG GGAGAGAACGATCCCTCGTCACTCTGGATCAGCGATCCCGCCGTCGAAGACGGCCCCGTCACCGGGATCGCCAAAACAGCTGCTCCACCGTCGACAAGCG GCTTGGCAGAGAACAACGGCGGAATCCACGGCGCACGGTAGCGGCCAGAACCAGAATAGCTTCTTCACTCGTGAATTGAACTTCGGGAACTCCTCGCTGA AGCCAGAGGCAGGGGAGATTCTCAGCTTCGCCGATAGCAAGAGGAGCTCGTCAAGTCCAAACGGGAACATTTTCGCCGGTGGACATCCGCCGGCGGCGGA GGAGAGCAACAAGAAGAAACGATCGAATCCGAATCCGAATCAAACGTCGAGAGGCAGTAACAAGGACGAAGGAATGCTTTCCTTTACGTCAGGAGTGATT CTGCCATCTTCAGGGAAAGTGAAATCAAGCGCCGGCGGAACAGCTGATTCAGACCCCTCAGACTTGGAAGCATCAATGGTTAGGGAAGTAGAGAGCAGGG TGGTGGAACCCGAGAAGAGGCCAAAGAAGCGAGGGAGGAAGCCGGCAAACGGTAGAGAGGAGCCACTGAACCATGTGGAAGCAGAGAGGCAGAGGAGGGA GAAGCTTAACCAAAAGTTCTACGCTTTGAGAGCAGTGGTTCCCAATGTGTCAAAGATGGACAAGGCTTCATTACTAGGTGACGCCATCTCGTACATCAAG GAGCTTCGATCGAAGCTCCAGTCAACGGAATCAGAGAAGGAGGAGCTGGAGAAGCAAGTCGAATCGATGATTAAAAAGCCGCTGCCTTCTTCTCCATCCG AATCGAAGATGTCCAACAATAACAATAACAGTATTAGCAGTAACAACCAGGCATCTTCAAAACCAGTGATCGAGATGGACATAGACGTGAAGATCATAGG GTGGGATGCAATGATAAGGATCCAATGTAGCAAGAGGAACCATCCAGCAGCTAGACTAATGGCTGCTCTCAAAGAGCTGGACCTTGATGTTCACCATGCC AGTGTTTCAGTGGTGAATGATCTGATGATCCAGCAAGCTTCTGTGAAAATGGGGAGCCGGTTTTACACCCAAGAGCAGCTCAGGTTAGCTCTGTCTGTCA AAGTTGGTGACACTCGATAG
AA sequence Show only first row Show all	>Lus10000484 pacid=23142786 polypeptide=Lus10000484 locus=Lus10000484.g ID=Lus10000484.BGIv1.0 annot-version=v1.0 MNLWTDDNASVMEAFMNSDLSSLWPPPPPTPLLHHHQPSSSSAVSTSTPPPDPIRPSSAPAGVASQSQSLNQETLQQRLQALIDGARENWTYAIFWQSSY DFSGASVLGWGDGYYKGEDKVKSVKRNFSPAEQEHRKKVLRELNSLISGPNSASDDVVDGEVTDTEWFFLVSMTQSFVNGVGLPGQAFFNGSPVWLVGSD RMASAPCDRAKQGQVFGLQTIVCIPSENGVVELGSTDSIFHSSDLMNKPEAELVHPGRRRLLRITTRERTIPRHSGSAIPPSKTAPSPGSPKQLLHRRQA AWQRTTAESTAHGSGQNQNSFFTRELNFGNSSLKPEAGEILSFADSKRSSSSPNGNIFAGGHPPAAEESNKKKRSNPNPNQTSRGSNKDEGMLSFTSGVI LPSSGKVKSSAGGTADSDPSDLEASMVREVESRVVEPEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAISYIK ELRSKLQSTESEKEELEKQVESMIKKPLPSSPSESKMSNNNNNSISSNNQASSKPVIEMDIDVKIIGWDAMIRIQCSKRNHPAARLMAALKELDLDVHHA SVSVVNDLMIQQASVKMGSRFYTQEQLRLALSVKVGDTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000484 [exp]	0	1
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	6.0	0.7776
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	9.2	0.7821
AT3G04310			unknown protein		Lus10032791 [exp]	10.9	0.6740
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	12.2	0.7708
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10025968 [exp]	12.3	0.7640
AT5G60460			Preprotein translocase Sec, Se...		Lus10036119 [exp]	12.4	0.7405
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10009057 [exp]	15.3	0.7474
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10039005 [exp]	16.9	0.7380
AT4G04614			unknown protein		Lus10006902 [exp]	17.1	0.7452
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10018942 [exp]	19.0	0.7371

Compare expression of checked genes

Lus10000484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.