Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32360 300 / 4e-100 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT3G19360 136 / 6e-37 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G35430 123 / 2e-33 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G68200 48 / 3e-06 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT5G06770 47 / 4e-06 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G12130 47 / 5e-06 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT1G66810 44 / 9e-05 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004573 [exp] 512 / 0 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1) Lus10043287 [exp] 150 / 2e-42 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10019431 [exp] 144 / 2e-40 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10021043 [exp] 53 / 1e-07 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 51 / 2e-07 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10004183 [exp] 52 / 4e-07 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10034624 [exp] 49 / 2e-06 AT1G68200 251 / 5e-82 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10012016 [exp] 45 / 2e-06 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10035256 [exp] 49 / 3e-06 AT1G68200 248 / 6e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093600 [exp] 374 / 1e-129 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 365 / 7e-126 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 151 / 4e-43 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.004G169500 [exp] 147 / 3e-41 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.003G061600 [exp] 95 / 2e-22 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.004G095100 [exp] 54 / 8e-08 AT1G66810 215 / 7e-68 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.017G119900 [exp] 52 / 3e-07 AT1G66810 221 / 3e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.016G046600 [exp] 47 / 8e-06 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 46 / 2e-05 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.010G118700 [exp] 45 / 2e-05 AT1G68200 243 / 1e-79 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10000486 pacid=23142784 polypeptide=Lus10000486 locus=Lus10000486.g ID=Lus10000486.BGIv1.0 annot-version=v1.0 ATGGAGGATAGCAGCAATGTCGTCCACGTGATTCCGAATCCGGTATGGGCGACTGAGGAAGACTACATCAACAACTACGAGAGCGGCGAGCCGCCGAGCA AGAAGGCGAAAGGGAACAGCAAATCGATCGGAAAAATGTTCTTCAAGACGAAGCTGTGCTGTAAGTTCAGGGCAGGGACGTGTCCGTACGTGACCAACTG CAACTTCGCTCACAGCATGGAGGAGCTCCGCCGGCCGCCGCACAACCGGCAGGAGATCGTGGCGGGGGCGGGAGGGGAGGATGAGGTGGCGGCAAGGGAG GAGTTTCAGATCCCTGCTGTGGTAGGAGGGTTTGGTGCTGAGGCTCAGCGGTCTTATAAAGGGAGGCATTGTAAGAAGTTCTATACGGAGGAAGGGTGTC CTTATGGGGATAGTTGTACGTTCTTGCATGATGAGCAATCCAAGAATAGGGAGAGTGTTGCTATTAGCTTGGGGCCTGGTGGCTATGGTGGAAATGGTGG CGGTGGTGGTGGAGGGAATGGAGGAGGAGCAGGGAGTGGAGTTGTGGTGGTGGTAGGAGGGGGTAATAATGGAGGTGGTGGTAATGGTTCAAATCTTAAG CCGTCGAATTGGAAGACGAGGATCTGTAACAAGTGGGAGCTTACTGGATATTGCCCTTTTGGAAGCAAATGCCATTTCGCTCATGGATCTGCAGAGCTAC ATCGTTATGGAGGCGGGCTTGTTGATTCGGAAGGCAAAGACTCACCCTCGGCCCCTTCTGACTCGAAGGCAGTAGGAGTCATGCCTTCAAAGTCACCCAT GGATGCGGTGGGAGCTTCGGTTACATCAGTGCCTCATTCTGATGTGTATCATCACCTTGGACTCCCTTCTCAGAGATCTACAACAACTCTCACTCAGAGA TCAGGGCAAAGGGCTCAGAAATGGAAAGGTCCCGATAAAATCAGTAGGATATACGGCGACTGGATCGACGACATGGAATGA
AA sequence Show only first row Show all	>Lus10000486 pacid=23142784 polypeptide=Lus10000486 locus=Lus10000486.g ID=Lus10000486.BGIv1.0 annot-version=v1.0 MEDSSNVVHVIPNPVWATEEDYINNYESGEPPSKKAKGNSKSIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSMEELRRPPHNRQEIVAGAGGEDEVAARE EFQIPAVVGGFGAEAQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGNGGGGGGGNGGGAGSGVVVVVGGGNNGGGGNGSNLK PSNWKTRICNKWELTGYCPFGSKCHFAHGSAELHRYGGGLVDSEGKDSPSAPSDSKAVGVMPSKSPMDAVGASVTSVPHSDVYHHLGLPSQRSTTTLTQR SGQRAQKWKGPDKISRIYGDWIDDME

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10000486 [exp]	0	1
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	2.0	0.8524
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	2.8	0.8198
AT2G30620			winged-helix DNA-binding trans...		Lus10005534 [exp]	3.5	0.8458
AT1G64450			Glycine-rich protein family (....		Lus10023071 [exp]	6.9	0.8455
AT5G57970			DNA glycosylase superfamily pr...		Lus10026083 [exp]	9.2	0.7965
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	10.5	0.7812
AT4G32915			unknown protein		Lus10006882 [exp]	11.8	0.7750
AT4G28100			unknown protein		Lus10018524 [exp]	14.1	0.8159
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10030421 [exp]	16.0	0.7961
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	20.0	0.7667

Compare expression of checked genes

Lus10000486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.