Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17920 180 / 8e-55 RING/U-box superfamily protein (.1) AT5G46650 166 / 2e-49 RING/U-box superfamily protein (.1) AT2G35420 121 / 1e-32 RING/U-box superfamily protein (.1) AT1G72200 123 / 4e-32 RING/U-box superfamily protein (.1) AT1G22500 119 / 9e-31 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT3G05200 114 / 9e-29 ATL6 RING/U-box superfamily protein (.1) AT1G32361 112 / 1e-28 ATL1F RING/U-box superfamily protein (.1) AT2G35000 112 / 3e-28 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT4G40070 110 / 6e-28 RING/U-box superfamily protein (.1) AT4G09130 105 / 1e-25 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004572 [exp] 514 / 0 AT4G17920 209 / 3e-66 RING/U-box superfamily protein (.1) Lus10030972 [exp] 258 / 6e-85 AT4G17920 191 / 6e-59 RING/U-box superfamily protein (.1) Lus10035368 [exp] 250 / 1e-81 AT4G17920 194 / 2e-60 RING/U-box superfamily protein (.1) Lus10004460 [exp] 136 / 8e-37 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 134 / 4e-36 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 117 / 2e-30 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 111 / 4e-28 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10029794 [exp] 103 / 8e-25 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10041134 [exp] 96 / 4e-22 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G140900 [exp] 204 / 3e-64 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 199 / 1e-62 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 129 / 2e-34 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 128 / 6e-34 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 117 / 8e-30 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 79 / 1e-17 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 83 / 2e-17 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 82 / 2e-17 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 82 / 2e-17 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 80 / 4e-17 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10000487 pacid=23142785 polypeptide=Lus10000487 locus=Lus10000487.g ID=Lus10000487.BGIv1.0 annot-version=v1.0 ATGTCTTCCACCGCCGACAGCACCACTATGCCGGCGGCAGATCATCAGTCATCATTCCCAGCTCCACCGGTGACCGTCGTCATAACAATCGTTACCATCA TCCTCTTCCTACTCGGCCTATTCTCCATCTACTTCTGTCGTTGCTTCCTGGAGAGTCTCTTGAACGGATGGCAGTTCGTCGGTCGAATTCCAAATCCGGG GAGAAATGCGGTAAACCCGAACTCCGCCAATCCGGCGGATGATGACGGCCTTGATCCCGCCCTGATCGAGCGATTCCCGACGGTTCCATACTCATGCGTC AAGGAGTTCAGGCGGGATAAGCATGAACTGGAATGCGCCATCTGTCTCGTCGAATTCGAGGAAGATGACCTCCTCCGTGTGGTAATCATGTGCTACCATG CATTCCACCCCGATTGCATCGACCTCTGGCTTCGGTCTCACAAGACGTGTCCCGTGTGCCGGCAAGACCTGGATCTGGTTTCGCGCGACAGTCTCGAGAA GACCTCTCTCAACCTCCTCAAGCATATCAACTCGATGAGCGAGGATGAGAGGAGTGGTCCGCTCGAACACTCCATCACGATCAACAACAACGGTGTCATT GATCGTGACAGAGATAGAGATCAGGAAGAAGAAGCCACGAAAATGAGAAGCAGTAAGAAATTCACGAGATCCCACTCGACGGGGCATTCCATAGTGGTGT CCAGGTCGTCGATAGGGGACCACGGGGAGGACGAGGATGACGGGTACACATTGAAGCTCATGCAAAATGTGAAGGTGAAGATGGTCGACGGCCCCAATAG ACACTGTCCAACGGGGAATTGTATCACATTCGGGGAATTTTCAGGTCCCCAAAAGGCTATCAACGATGTTAACATGTTGCATATCGGTTGTGTTGGGTTC GAAGAGGTGGCCGGGGGGACTTCTACTTCTATAGTAGTGTAG
AA sequence Show only first row Show all	>Lus10000487 pacid=23142785 polypeptide=Lus10000487 locus=Lus10000487.g ID=Lus10000487.BGIv1.0 annot-version=v1.0 MSSTADSTTMPAADHQSSFPAPPVTVVITIVTIILFLLGLFSIYFCRCFLESLLNGWQFVGRIPNPGRNAVNPNSANPADDDGLDPALIERFPTVPYSCV KEFRRDKHELECAICLVEFEEDDLLRVVIMCYHAFHPDCIDLWLRSHKTCPVCRQDLDLVSRDSLEKTSLNLLKHINSMSEDERSGPLEHSITINNNGVI DRDRDRDQEEEATKMRSSKKFTRSHSTGHSIVVSRSSIGDHGEDEDDGYTLKLMQNVKVKMVDGPNRHCPTGNCITFGEFSGPQKAINDVNMLHIGCVGF EEVAGGTSTSIVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17920			RING/U-box superfamily protein...		Lus10000487 [exp]	0	1
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	4.1	0.8797
					Lus10004437 [exp]	5.8	0.8797
AT5G28690			Protein of unknown function (D...		Lus10005536 [exp]	6.2	0.6104
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	7.1	0.8797
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10038929 [exp]	7.9	0.6345
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	8.2	0.8797
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10014883 [exp]	8.8	0.6036
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	9.2	0.8797
					Lus10021739 [exp]	10.1	0.8797
					Lus10039674 [exp]	10.9	0.8797

Compare expression of checked genes

Lus10000487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.