Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015596 [exp] 76 / 3e-17 ND 41 / 2e-04 Lus10034050 [exp] 62 / 5e-12 ND / Lus10000349 [exp] 64 / 7e-12 AT3G09510 49 / 5e-06 Ribonuclease H-like superfamily protein (.1) Lus10012727 [exp] 56 / 3e-09 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10042653 [exp] 51 / 3e-08 ND / Lus10012364 [exp] 52 / 7e-08 ND / Lus10033031 [exp] 49 / 6e-07 ND / Lus10025268 [exp] 47 / 1e-06 ND / Lus10006192 [exp] 48 / 2e-06 AT5G11150 345 / 9e-121 vesicle-associated membrane protein 713 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000488 pacid=23142787 polypeptide=Lus10000488 locus=Lus10000488.g ID=Lus10000488.BGIv1.0 annot-version=v1.0 ATGAGGCTTGGTTCCCAGGTACTACTGACTTTGAATGTCATCCGAATCCAAATGTTACCTGTAAGATTGCAGACTGTATCATATAGCCACAACGAGCGTG GGATCTTACTAAACTACGTACAATCTTCCGTGAGTCTACTGTTCAAGAGATTGCTGTTATCGGGCCTGCCTCGATGGAGGATCGTTGGATATGGCATCAC GACAACAAAGGGTGTTTCTCGGTTCGCTCTTGTTATAGAACGCTGCAGCAAGAAAGCCAAGGGCTTTGGAGTCGTTATGCTCGACACCGAGGGGAAAATC GTTGGTGGTAGGGCTGACAGCTTCCCTTGTCGATCTCCAAGCTGTGCGGAAGCTCACGCTATCTTGATTGCTGCAGAACTTGCTGTTCGAGACAATTTAC CCGCTGTGATTTTGTCTGACTGCTTGACTGTTATCAAAGCAATCTCTGAACCTCCTGATTCATGGCCGTGGGAATGTGCGGCTATTATCGCCTCTATCAC AGAAATCGTAGGCGACTCCTCGCTTATTGAAGTCAAATACTGTTGCCGCCAAGAGGTTCGGAAGGTGGATTGGATAGCAAGAATGGCGAGGGATGGGATT TTACTTCCAAATTGGCTATTGTCAATTTGA
AA sequence Show only first row Show all	>Lus10000488 pacid=23142787 polypeptide=Lus10000488 locus=Lus10000488.g ID=Lus10000488.BGIv1.0 annot-version=v1.0 MRLGSQVLLTLNVIRIQMLPVRLQTVSYSHNERGILLNYVQSSVSLLFKRLLLSGLPRWRIVGYGITTTKGVSRFALVIERCSKKAKGFGVVMLDTEGKI VGGRADSFPCRSPSCAEAHAILIAAELAVRDNLPAVILSDCLTVIKAISEPPDSWPWECAAIIASITEIVGDSSLIEVKYCCRQEVRKVDWIARMARDGI LLPNWLLSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000488 [exp]	0	1
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	2.4	0.9409
					Lus10016100 [exp]	3.9	0.9244
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	5.3	0.9392
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10016856 [exp]	6.0	0.8969
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	6.9	0.9355
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	7.7	0.9331
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10000231 [exp]	7.7	0.8928
AT5G25840			Protein of unknown function (D...		Lus10011427 [exp]	8.8	0.8864
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	9.8	0.9175
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10007023 [exp]	10.1	0.8847

Compare expression of checked genes

Lus10000488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.