Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 179 / 2e-49 Ankyrin repeat family protein (.1) AT5G35810 162 / 4e-45 Ankyrin repeat family protein (.1) AT5G04700 159 / 4e-42 Ankyrin repeat family protein (.1) AT5G04730 156 / 5e-41 Ankyrin-repeat containing protein (.1) AT5G04690 144 / 8e-37 Ankyrin repeat family protein (.1) AT3G54070 142 / 3e-36 Ankyrin repeat family protein (.1) AT5G04680 130 / 4e-32 Ankyrin repeat family protein (.1) AT1G10340 56 / 4e-08 Ankyrin repeat family protein (.1.2) AT4G03490 51 / 2e-06 Ankyrin repeat family protein (.1.2) AT2G24600 50 / 2e-06 Ankyrin repeat family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014701 [exp] 820 / 0 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10003282 [exp] 390 / 1e-127 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10016672 [exp] 374 / 1e-120 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10019887 [exp] 199 / 3e-55 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10014030 [exp] 189 / 5e-52 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10027721 [exp] 179 / 4e-49 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10038357 [exp] 176 / 2e-47 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10000916 [exp] 150 / 2e-39 AT1G03670 52 / 1e-06 ankyrin repeat family protein (.1) Lus10035567 [exp] 126 / 3e-31 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048832 [exp] 489 / 9e-166 AT3G18670 195 / 2e-53 Ankyrin repeat family protein (.1) Potri.002G048666 [exp] 457 / 5e-150 AT5G04700 181 / 3e-47 Ankyrin repeat family protein (.1) Potri.004G003401 [exp] 236 / 1e-69 AT5G35810 154 / 2e-41 Ankyrin repeat family protein (.1) Potri.015G125000 [exp] 215 / 2e-61 AT3G18670 395 / 5e-128 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 211 / 4e-60 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.011G019500 [exp] 208 / 4e-59 AT3G18670 105 / 2e-23 Ankyrin repeat family protein (.1) Potri.008G023500 [exp] 206 / 3e-58 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1) Potri.011G015750 [exp] 199 / 4e-58 AT3G18670 144 / 1e-37 Ankyrin repeat family protein (.1) Potri.006G281500 [exp] 204 / 3e-57 AT3G54070 110 / 8e-25 Ankyrin repeat family protein (.1) Potri.006G062700 [exp] 201 / 3e-57 AT3G54070 334 / 2e-106 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000489 pacid=23160460 polypeptide=Lus10000489 locus=Lus10000489.g ID=Lus10000489.BGIv1.0 annot-version=v1.0 ATGACAGGTCGGTGGTCGGAGTACGGAACGACGACAGCGAGACACCGCTATTCTTGGCTGCCGCCCACGGCAAGAAGGAATCGTTCCTCTGCCTGCATCG GATTTGTGGAGCGGAGGAGTACCGGCAGCATTATAGAGGGAAGGACGGCGAGACCATCCTCCATGCCGCCATCGCCGGCGATACTTCGAGAACTAGTAAA CGCGGTGAACACGCAGGGGAAAACTCCTCTGCATCTGTTGGCCAGTAAACCTGGTGCGTTTAGGAGCGGCAGCCATCTTGGAGGATATCACCAGCTCATT TACTATTGTACGTTTGTGGATATGCTTCAGCCAGAAATACCTCCTACATACACAAGGCGAAGTGCAGCAACTGCCACATCCTATCCTCTTAACTATGAAA CCTGTGTTTCTTTGTTAGCATTGCCACTTGAAATAGGATCGACCCAATTGGGAAAGCTGCGGATCAAAAAGGAAAAGCACGCTTGGTCAGTTCAAATAAT GAACGAGCTTCTGAAAGATGCTGAAACCTATGTTTACGAGTACAACGGGCGAAGCCCCCACCCAATCGAAACGCCTCTCGAGTTTACCGACGTGTTGTCC GCGGCAGCAGGGGAAGATGCTAACAAGCACAAGCACGTCGAAACTCTTGAGACGCCGATACTGATAGCAGCGAAGAACGGGATCACTGAAATAGTAGAGA AGATTCTGGATCTGTATCCTGTGGCTATCAATGACATGAACATGCAGAAGAAAAACATCGTACTGTTAGCAGTAGAGAACAGGCAGTCTCACGTTTACGA ACGATTGCTGAAGAGAATAGTTATAAGAGAGAGCGTGTTCCAGAAAGTCGACCACCGTGGGAATAGCGCATTACACCTCGCCGCCGCACTAGGCCAGAAC AAACCCTGGCGGATCCCCGGCTCTGCACTCCAAATGCAATGGGAAATCAAGTGGTACGAGTTTGTTAAGAACTCGATGCCGTATAATTGCTTCATCAAGC ACAATAAGGACGGCAACAGTCCACGCGACATCTTCTCCGAGCAACACGCAGACCTCGTCCGCAGCGGCGGCGAGTGGCTGACGAACACCTCGGAGTCCTG CTCCGTGGTGGCAGCGCTAATCGCCACCGTGGCATTTGCCACATCGTCTACTTTCCCCGGAGGGGTGGAGCCGAGCAGGAAGCCGACGCTTTCGTCGCAC CCGGCTTTCCACGTGTTCGCCATCTCATCGTTGGTGGCGCTGTGCTTCTCCGTCACCTCGTTGGTTATGTTCCTCTCCATCCTGACGTCGCGGTTCCAGG AGAAGGACTTCGGCGGTGACTTGCCGAGGAAGCTTCTCATAGGGCTGTCGTCGTTGTTTGTTTCGATTGCGGCGGTGCTGGTGAGCTTCTGCGCTGGACA TTTTTTTGTGATGAAGGATGAGCTCAAGTACGCGGCGTATCCGGTATTTGCGCTGACGTGTCTCCCAGTCAGCTTCTTTGCTGTCGCGCAATTCCCACTT TACGTTGACCTTGTTCGCGCCACTTTCCAGCGGGTCCCGCGCCGCAGTTATATGGTTGTTCCTCCTTGA
AA sequence Show only first row Show all	>Lus10000489 pacid=23160460 polypeptide=Lus10000489 locus=Lus10000489.g ID=Lus10000489.BGIv1.0 annot-version=v1.0 MTGRWSEYGTTTARHRYSWLPPTARRNRSSACIGFVERRSTGSIIEGRTARPSSMPPSPAILRELVNAVNTQGKTPLHLLASKPGAFRSGSHLGGYHQLI YYCTFVDMLQPEIPPTYTRRSAATATSYPLNYETCVSLLALPLEIGSTQLGKLRIKKEKHAWSVQIMNELLKDAETYVYEYNGRSPHPIETPLEFTDVLS AAAGEDANKHKHVETLETPILIAAKNGITEIVEKILDLYPVAINDMNMQKKNIVLLAVENRQSHVYERLLKRIVIRESVFQKVDHRGNSALHLAAALGQN KPWRIPGSALQMQWEIKWYEFVKNSMPYNCFIKHNKDGNSPRDIFSEQHADLVRSGGEWLTNTSESCSVVAALIATVAFATSSTFPGGVEPSRKPTLSSH PAFHVFAISSLVALCFSVTSLVMFLSILTSRFQEKDFGGDLPRKLLIGLSSLFVSIAAVLVSFCAGHFFVMKDELKYAAYPVFALTCLPVSFFAVAQFPL YVDLVRATFQRVPRRSYMVVPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18670			Ankyrin repeat family protein ...		Lus10000489 [exp]	0	1
AT4G27595			Plant protein of unknown funct...		Lus10042237 [exp]	37.6	0.6811
					Lus10008920 [exp]	94.0	0.6202

Compare expression of checked genes

Lus10000489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.