Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14720 183 / 3e-54 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT4G14713 174 / 7e-51 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2) AT5G20900 51 / 2e-07 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT1G17380 48 / 7e-06 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1) AT1G19180 47 / 8e-06 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT3G43440 47 / 1e-05 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT3G17860 47 / 2e-05 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G70700 42 / 0.0005 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014700 [exp] 607 / 0 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10039911 [exp] 51 / 9e-07 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10008129 [exp] 49 / 2e-06 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10027648 [exp] 48 / 7e-06 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10011929 [exp] 47 / 1e-05 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1) Lus10013166 [exp] 46 / 3e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048500 [exp] 323 / 2e-108 AT4G14720 95 / 6e-22 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.005G214300 [exp] 318 / 4e-106 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.003G068900 [exp] 62 / 9e-11 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.006G139400 [exp] 56 / 2e-08 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.008G133400 [exp] 50 / 1e-06 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.001G166200 [exp] 49 / 2e-06 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2) Potri.015G035800 [exp] 48 / 7e-06 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.006G217200 [exp] 47 / 1e-05 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.010G108200 [exp] 46 / 3e-05 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.018G047100 [exp] 44 / 6e-05 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10000490 pacid=23160458 polypeptide=Lus10000490 locus=Lus10000490.g ID=Lus10000490.BGIv1.0 annot-version=v1.0 ATGCAGCCTGCTGTCGGCGATACCGCTTCCCGTTCCCCGCTTGACAAGCCGCTCCACCAGCTAACCGAAGATGACATTTCTCAGCTCACTCGAGAGGATT GCCGCAGATTCCTCAAAGAGAAAGGGATGAGAAGGCCGTCGTGGAACAAATCGCAGGCAATCCAGCAGGTGATCTCGCTCAAAACCCTACTTGAACCGCC GCCGGAGTCCGAAGACGGCCAACCTCCACGGAGGCGCTACATTCCCCGTACGGCTAACACGTATCGTGCCCCTGCAACTCCAAATCCCGCTGTTTCAGTG AGAGTATCCGCCGTTGATACTCCGATCTCTGCCCCTCCCGATGATTCTGCACCCTATCGCCGGCATGATCCTCCTTTGAATGATTTTCCGGCGAGTAACT CTCTTCCTCCTGCTCCGGTTCCGGCTGTACATCACGCTGCCATAAAAGAGAACGGTTCCGTCTCTCCCAGGAGTACAGGTCAAGTTAATGAACAACATGG GCAGATGACAATATTTTACTGTGGGAAGGTGAATGTCTATGATGATATGCCGAGAGATAAGGCTCGAGTTATTCTGCAGCTTGCTGCAAGTCCTGTCCCC TTGACACAGGATGGCACATCTGATGCTAGTCAACCTGCATGGCCCTTCCCCGGTCAAACGGAAACTCATGGTGCTAAAGCTGCTCAAACGTCATCAGCTC TGCCCTTTTCTTCCCTGCAAACTGAAAACTGTCTTATTTTGAGGGACAACTGCCATTTCACTCCTGAAGGCAACCAAGAAGGCCCTGCAAGCAGAAAAGC GTCCGTGCAGAGATATCTTGAGAAGCGGAAAGACAGGTTCAAGCACAAGAGAAAAGTGGCAATGCCTACATCAGCTAATTTAGACATCTACTTAAACAAC CGGGTGGGCGATCAAGTCTCAAATGAACCATGGGGCTCAACTGATACTTGCTCCTCTCCTCAATCTATACATCCCCAGCGCTGCATTTCTGCTGAGAACA CAGCAAAGCACTCCATTCTCGCTGCTGATCTCGCTCCCAAAGGTTTATCCGTTTTCTGTATGCACGAGAATGTTAAGCGCTGTGAGGATAAAGGCATAAA ACAAAACTCTTGGCAGCAATTCAGTATTTTAGGCCACGTCAACACTCTGTCACCCATCCGAAGCGAGTGGGTTCGAGGAAGGTATTTGGTTGTTGGTTCC TTCCTGGTTAGAATTCCTAAACATGTAGTATATACAACATGTTGTAGAGCAATGTCGCGGTTATCTCTTCTGGGCTAA
AA sequence Show only first row Show all	>Lus10000490 pacid=23160458 polypeptide=Lus10000490 locus=Lus10000490.g ID=Lus10000490.BGIv1.0 annot-version=v1.0 MQPAVGDTASRSPLDKPLHQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKTLLEPPPESEDGQPPRRRYIPRTANTYRAPATPNPAVSV RVSAVDTPISAPPDDSAPYRRHDPPLNDFPASNSLPPAPVPAVHHAAIKENGSVSPRSTGQVNEQHGQMTIFYCGKVNVYDDMPRDKARVILQLAASPVP LTQDGTSDASQPAWPFPGQTETHGAKAAQTSSALPFSSLQTENCLILRDNCHFTPEGNQEGPASRKASVQRYLEKRKDRFKHKRKVAMPTSANLDIYLNN RVGDQVSNEPWGSTDTCSSPQSIHPQRCISAENTAKHSILAADLAPKGLSVFCMHENVKRCEDKGIKQNSWQQFSILGHVNTLSPIRSEWVRGRYLVVGS FLVRIPKHVVYTTCCRAMSRLSLLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10000490 [exp]	0	1
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	7.4	0.9145
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10025684 [exp]	7.5	0.8819
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	9.2	0.9147
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10018611 [exp]	12.0	0.8973
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	12.5	0.9176
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	16.7	0.8588
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10016139 [exp]	17.1	0.9144
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	17.5	0.9171
AT5G49960			unknown protein		Lus10036585 [exp]	19.2	0.8766
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	20.9	0.9152

Compare expression of checked genes

Lus10000490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.