Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63340 1053 / 0 Protein phosphatase 2C family protein (.1.2) AT3G63320 331 / 1e-103 Protein phosphatase 2C family protein (.1) AT2G30020 105 / 8e-24 Protein phosphatase 2C family protein (.1) AT4G31750 100 / 9e-23 WIN2 HOPW1-1-interacting 2 (.1) AT1G72770 103 / 1e-22 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT5G57050 99 / 7e-22 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT4G26080 98 / 3e-21 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT1G07160 97 / 3e-21 Protein phosphatase 2C family protein (.1) AT1G43900 97 / 3e-21 Protein phosphatase 2C family protein (.1) AT5G24940 97 / 6e-21 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014699 [exp] 863 / 0 AT3G63340 360 / 4e-112 Protein phosphatase 2C family protein (.1.2) Lus10026908 [exp] 101 / 3e-23 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 100 / 5e-23 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 100 / 5e-23 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 100 / 2e-22 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026381 [exp] 99 / 9e-22 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 98 / 1e-21 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10026447 [exp] 100 / 2e-21 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 100 / 2e-21 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214650 [exp] 1299 / 0 AT3G63340 1166 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G214500 [exp] 279 / 1e-84 AT3G63340 304 / 3e-94 Protein phosphatase 2C family protein (.1.2) Potri.019G071600 [exp] 112 / 6e-26 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 109 / 6e-25 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.010G187000 [exp] 100 / 2e-22 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 98 / 6e-22 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 97 / 8e-22 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G224600 [exp] 97 / 1e-20 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.008G070400 [exp] 95 / 1e-20 AT2G40180 365 / 1e-124 phosphatase 2C5 (.1) Potri.001G092100 [exp] 95 / 2e-20 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10000491 pacid=23160456 polypeptide=Lus10000491 locus=Lus10000491.g ID=Lus10000491.BGIv1.0 annot-version=v1.0 ATGAACCTGCTGCAATCGAATTCCATTCTGTTAATTCTAGGGTTTGCTCTAGCATTTCCCAGGAGCTGCCATGGAGGAGAGTCGTCCACCTGTTTAATAG TATACAAAGAAGGCGGTGCTCCAGCGGTGTTCCAGTCTCCCAAATGCCCCCGCTGGAGTCTTTCCAGCTACCACCAGCCTCAACCAGACAGCTCCACTGC CGCGCCTACCAGAGGCCGTTGTCAATGGGCGATGCTTCGAGGTCGACGAAAGTATCAGGAGGACAGAATCCTCTGCGCTCATGATCTTCGCATCCCTTTA CCTGGTAAAATAGGGCTTAAGGAAGTCAGGGTGGACATGGTCGCGGTGTTTGATGGTCATAATGGTGCTGAGGCTAGTGAGATGGCGTCGAAGCTCCTAT TGGAGTACTTTGCGCTGCATACTTACTTCCTTCTGGATGCAACCTATTCTTTAGCATTCAAGAAATCCACCGGAAGAATGAGGGACGAGGGAGCTAAGGA TGTCGCTTTTCAATTGCTAAGTTCAGTTGAAGAACCTGGTCGACCTGATTACAAAATTGAGAGCATTCACTCAATTATCATGAAGGAAGCATCTAGGAAG AATCTTAAATCAGGTTCCACAGCAGCTGTGGTACTACTAGCAGACGGGAAAATACTAGCGGCCAATCTTGGAGATTCAAAGGCTCTTTTGTGTTCTGAGA AGTTTCAGTCTCCTGAAGAAGCAAAAGCATCTTTGTTAAACAAATACAGGGAGCAGATTCGTAATGGAGTAGTTTCAAATGCCAGAAATTATAGAAGCAT TAGATCAGCAACATCTAAGGGAGTGAAGCGATTTCACTCTAAGGAATTAACTCAAGATCATCATCCCGATAGAGAGGACGAAAAGATTCGAGTGGAAGCT GCCGGTGGATACATACTTGAGACAAGTGGTGTGGCTCGTGTAAATGGCGAGCTGGCTGTGTCCCGAGCTATTGGGGATTTACAGCTCAGAAGATATGGTG TCATATCATTACCAGAAGTGACAAATTGGCAACCTCTCACTGCAAGTGATAGCTATCTGGTGGTTGCATCTGATGGTGTGTTTGAGAAGTTGGGATCTCA AGAAGTTTGTGATATACTGTGGGAAGCCCCAAATTGTGGGGTTGGGAAACCTGAGCTATCTTCTTCTCGCTCATATTCTCTAGCTGAGTGTTTGGTTGAA ACAGCATTTGTTCAGGGCAGTATGGATAACATTGCAGTCGTGGTGGTTCCATTAAGAACGATTATTGTTTCTGAAACTTTGCTGAAAGAAAGCTGTGCTG AGAAAGAAGACATAAATTGTTCATCTACTGTCGTAACAAAGTTTGTGCATGAAGAATCAGCTCAAGACTTGACTTCTGAGTTGGCACACTTGGAGCACAG GCTTCCTCTCATTACAGAGTTTAGCCGATTATTGGTTGAAGCCAAATATGCTAATCTTGGCTGTTATTATTTGGACGAGAATCTCAACAATTTCACAGAT GCGTGGAAAGCTCAACACACAGTCTCAAAACATTATAGCAATGACCTACCTCAGGCCTTACCTGAAGCATTAGATCACCATGATGAGGATGGATTTAAAG GTCAATGCCCTAATCCCGAGGGATTTTCCAGTTTCCTTGGTTTGCTGGAATCTATTCCTTTCCCTGATTCTGGTTCAAGTTATGTCTCAACAGATGAGGT AATGCCTGATTTGAGGTATCTGCTAAAGAAACGATTTGGCCGTGGAGCATATGGTGAAGTATGGCTTGCTTTTCACTGGAATTGTCATCAAGAGACTAAT GGTTCAGATTCTGTAATAAAGAATGAAAATATCTCATCTGATCATGGTCAGTCTGCTGGCTCATCTGATGGTGAGATGTTCATTCTCAAACGAATAATGG TGGAGAGAGGACCCGCTGTATACCTAAGTGGTCTAAGGGAGAAATATTTTGGTGAAATGTTCTCTAACGCCTCCAAGAGTGTACAAGGGATATCAGATGC ATATGGATCATCCTTTTCTGGGGATTTTGAATCAGATTTTGATAACCCATCCAAAATGAGTGAATCATTTTATGGATTAGGAACTCAATGGGTCCTCAAC GGGTTTGTATTTCAGAAAGAAGGTTTTGAAGAAGGCTTGAACCATATAGCAAGATACATAGAGTCCTTTGAGTCCAAGTCAAATGAAATGTGGCTTGTAT TCCGTCATGAAGGTGTTTCCTTGTCAAAGATTATGTACACCGTCGAGGAGGTAAATGATAATGTTACCAAAGAAAAGCTTGAAACAGTAAACCATGCTCA GGTATTGCGTCCGTCACTATGGTGGCACTGGTTGAAAACAACGGAAGCAGGAAAACAAGAAATGAGAATTATTATTCGGCAACTGTTGATGGCACTCAAA TCCTGTCATAGCCGTAATGTTACCCATAGGGATATTAAACCTGAGAACATGGTGGTCTGCTTTGAAGATGCAGAGACTGGGAGATGCTTGAAAGGAGTTA CAAATGGATATAAGAACTACACAGTAAAAATGCGCATTATTGACTTTGGCAGTGCAGTTGATGATTTTACTATGAAGCACTTTTATGGATCAAGTGGACC TAGTAGGGCTGAACAAACTTATGAGTATAGTCCTCCTGAAGCTTTTCTCAATGCTAGCTGGCATCACGAATCAACAAGCAGGAGATTGAAGTATGATATG TGGAGTGTTGGTGTTGTAATTTTAGAGTTGATCCTGGGGTCACCAAGCGTTTTCCAGGTAGATGCCAGAACTCATGCTCTTCTCGATCCACACGTTGATG GTTGGAATGAAGACCTGAAGGAGCTTGCTTACAAACTTAGGTCATTCATGGAGCTCTGCATCTTAATCCCAGGGCGTTCGTCTAAACACCATCGTACTAT GGGGCAACTGGAAGATTCACCTGTTTCCTGGAAATGCTCCGAGGATTTCTTTTCCCAGCAGATCAAAAGTAGGGATCCGTTGAAGATCGGGTTTCCAAAC GTGTGGGCTTTGCGGTTAGTGCGTCAACTACTACTCTGGGATCCTGGTGACCGGTTGAGCGTCAACGAAGCATTGGACCATCCTTATTTCAAGCGCTCCA CCTAA
AA sequence Show only first row Show all	>Lus10000491 pacid=23160456 polypeptide=Lus10000491 locus=Lus10000491.g ID=Lus10000491.BGIv1.0 annot-version=v1.0 MNLLQSNSILLILGFALAFPRSCHGGESSTCLIVYKEGGAPAVFQSPKCPRWSLSSYHQPQPDSSTAAPTRGRCQWAMLRGRRKYQEDRILCAHDLRIPL PGKIGLKEVRVDMVAVFDGHNGAEASEMASKLLLEYFALHTYFLLDATYSLAFKKSTGRMRDEGAKDVAFQLLSSVEEPGRPDYKIESIHSIIMKEASRK NLKSGSTAAVVLLADGKILAANLGDSKALLCSEKFQSPEEAKASLLNKYREQIRNGVVSNARNYRSIRSATSKGVKRFHSKELTQDHHPDREDEKIRVEA AGGYILETSGVARVNGELAVSRAIGDLQLRRYGVISLPEVTNWQPLTASDSYLVVASDGVFEKLGSQEVCDILWEAPNCGVGKPELSSSRSYSLAECLVE TAFVQGSMDNIAVVVVPLRTIIVSETLLKESCAEKEDINCSSTVVTKFVHEESAQDLTSELAHLEHRLPLITEFSRLLVEAKYANLGCYYLDENLNNFTD AWKAQHTVSKHYSNDLPQALPEALDHHDEDGFKGQCPNPEGFSSFLGLLESIPFPDSGSSYVSTDEVMPDLRYLLKKRFGRGAYGEVWLAFHWNCHQETN GSDSVIKNENISSDHGQSAGSSDGEMFILKRIMVERGPAVYLSGLREKYFGEMFSNASKSVQGISDAYGSSFSGDFESDFDNPSKMSESFYGLGTQWVLN GFVFQKEGFEEGLNHIARYIESFESKSNEMWLVFRHEGVSLSKIMYTVEEVNDNVTKEKLETVNHAQVLRPSLWWHWLKTTEAGKQEMRIIIRQLLMALK SCHSRNVTHRDIKPENMVVCFEDAETGRCLKGVTNGYKNYTVKMRIIDFGSAVDDFTMKHFYGSSGPSRAEQTYEYSPPEAFLNASWHHESTSRRLKYDM WSVGVVILELILGSPSVFQVDARTHALLDPHVDGWNEDLKELAYKLRSFMELCILIPGRSSKHHRTMGQLEDSPVSWKCSEDFFSQQIKSRDPLKIGFPN VWALRLVRQLLLWDPGDRLSVNEALDHPYFKRST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63340			Protein phosphatase 2C family ...		Lus10000491 [exp]	0	1
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	4.7	0.8850
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	6.0	0.8805
AT5G22450			unknown protein		Lus10004878 [exp]	7.5	0.8710
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10039250 [exp]	9.2	0.8509
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	9.2	0.8687
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	13.0	0.8687
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	13.7	0.8631
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10006670 [exp]	14.3	0.8124
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10040831 [exp]	14.5	0.8409
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	14.8	0.8511

Compare expression of checked genes

Lus10000491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.