Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22830 293 / 2e-96 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G51910 263 / 8e-87 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT2G26150 254 / 4e-82 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G63350 229 / 2e-73 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT1G32330 228 / 3e-70 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 227 / 9e-70 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 226 / 2e-69 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 218 / 1e-66 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G43840 200 / 7e-62 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT5G03720 184 / 3e-54 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014698 [exp] 544 / 0 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 366 / 2e-125 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 261 / 7e-84 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 258 / 3e-83 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10011065 [exp] 237 / 6e-74 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 236 / 8e-74 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10030956 [exp] 232 / 5e-72 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 230 / 4e-71 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10013797 [exp] 224 / 3e-70 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214800 [exp] 347 / 3e-118 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 343 / 8e-117 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 304 / 1e-101 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 297 / 6e-99 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 234 / 1e-73 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.001G138900 [exp] 236 / 4e-73 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 234 / 2e-72 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 209 / 8e-63 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G148200 [exp] 207 / 3e-62 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.006G115700 [exp] 199 / 6e-59 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10000492 pacid=23160459 polypeptide=Lus10000492 locus=Lus10000492.g ID=Lus10000492.BGIv1.0 annot-version=v1.0 ATGAACAATTTCTTCACCGTGAAGGAAGAGTACCCCGGTGACACGCCGGCAATGACGACGGCGATGATGACGGTGGTGCCACCGCCGCAACCGATGGAAG GCCTCCACGACGCCGGACCTCCTCCATTTCTCACTAAAACATTCGAGATGGTCGACGATCTGTTCACAAACCACGTCGTCTCCTGGAGCAGAGGTGGCAC AAGCTTCGTCGTCTGGGATCCTCATTCCTTCTCTACAAACCTCCTCCCTCGCTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCCGACAGCTCAACACT TACGGATTCCGAAAGATCGATCCAGAGCGATGGGAGTTCGCCAATGAGGAATTCCTTCGAGGCCATAAGTATCTCCTGAAGAACATCCGGCGAAGGAAAG CTCCTCTTCCTCCTCCTCCTTCTCTTTCCCCTTCTCCTTCTCCTTCTCAATCCTTCTACGCTACAATTCCAAATCAAGCACCGGGGACCAGCGCCGTCGA GCTTGGCCAATTCGGTCTCGACGGTGAACTCGGCCGATTGAAGCGGGACAAACAGGTGCTGACGATGGAGCTAGTGAAGCTCCGGCAGCAGCAGCAGAGT ACGAAAGCTTACGTGACGGAGCTGGAGCAGAGGTTACAAGGAACGGAGTCTAAGCAGCAGCAGATGATGCGGTTCTTGGCTCGGGCTGTTCAGAACCCGG CGTTCCTGCATCAGCTGGCGCAACGGAAGGAGAAGAGGAAAGAGCTGGAAGAAGCGCTGAGCAAAAAGCGGAGGCGACCGATTGACCGAGGGAGAGGTAA GAATCTGGTTGGAGAATCGAGCAATTGGAGGCAGGTGATCAAACCGGAGCCGGTGAAGTACGGAATCGGATCGCCGTTTGGATTGACGGAGCTGGAGGCT CTGGCGCTGGAAATGCAAGGGATGGGGAAAGGAGTTAGGCTGGAGGAAGCGGATGGGGAGGAAGAGGATGGGGAGGAACTTGAAGCAACTTCGGATGGGG AGCTAGACGACGGATTCTGGGAAGAATTGCTGAATGAAAGTAGCGGCGGCGGTGGGGAAGAACAGGAAGACGTCAACACCTTGGCAGAACAGTTAGGTTA CTTGAGCTCTTCGAGTCCTAAATAG
AA sequence Show only first row Show all	>Lus10000492 pacid=23160459 polypeptide=Lus10000492 locus=Lus10000492.g ID=Lus10000492.BGIv1.0 annot-version=v1.0 MNNFFTVKEEYPGDTPAMTTAMMTVVPPPQPMEGLHDAGPPPFLTKTFEMVDDLFTNHVVSWSRGGTSFVVWDPHSFSTNLLPRFFKHNNFSSFVRQLNT YGFRKIDPERWEFANEEFLRGHKYLLKNIRRRKAPLPPPPSLSPSPSPSQSFYATIPNQAPGTSAVELGQFGLDGELGRLKRDKQVLTMELVKLRQQQQS TKAYVTELEQRLQGTESKQQQMMRFLARAVQNPAFLHQLAQRKEKRKELEEALSKKRRRPIDRGRGKNLVGESSNWRQVIKPEPVKYGIGSPFGLTELEA LALEMQGMGKGVRLEEADGEEEDGEELEATSDGELDDGFWEELLNESSGGGGEEQEDVNTLAEQLGYLSSSSPK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000492 [exp]	0	1
AT2G36895			unknown protein		Lus10001393 [exp]	4.1	0.7150
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	7.9	0.6911
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10023544 [exp]	17.9	0.6168
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	18.3	0.6217
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	18.5	0.6845
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10026620 [exp]	22.1	0.6401
AT4G27610			unknown protein		Lus10034127 [exp]	24.8	0.5619
AT5G58610			PHD finger transcription facto...		Lus10007741 [exp]	28.5	0.6186
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	47.2	0.5740
					Lus10024012 [exp]	48.6	0.5969

Compare expression of checked genes

Lus10000492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.