Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19840 544 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G20810 93 / 3e-20 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G45880 51 / 1e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G06550 45 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014697 [exp] 372 / 2e-126 AT5G19840 159 / 7e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10031247 [exp] 82 / 1e-16 AT3G20810 500 / 8e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10031818 [exp] 77 / 4e-15 AT3G20810 497 / 1e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10035699 [exp] 62 / 4e-10 AT3G45880 461 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037290 [exp] 41 / 0.0003 AT3G45880 164 / 7e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10029343 [exp] 43 / 0.0005 AT5G06550 730 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215200 [exp] 702 / 0 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G047875 [exp] 93 / 5e-22 AT5G19840 54 / 8e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G016200 [exp] 91 / 1e-19 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.009G025400 [exp] 56 / 4e-08 AT3G45880 417 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G233200 [exp] 52 / 5e-07 AT3G45880 404 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G065400 [exp] 44 / 0.0002 AT5G06550 711 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF08007 [flax] [poplar] Cupin_4 Cupin superfamily protein
Representative CDS sequence Show only first row Show all	>Lus10000493 pacid=23160457 polypeptide=Lus10000493 locus=Lus10000493.g ID=Lus10000493.BGIv1.0 annot-version=v1.0 ATGGAAGAGATTAAGCAGCTGAAAATCAATGTGTTCGAGCAGCCTCCTTCGGCAGCGGTATTCGCATCTGAAATCGAGTCGAAGAACGTTCCGGCGGTAT TCACTGGATGCATCAAGAATTGGAGAGCTTACACCAGTTGGGATCCTGCTAATGGAGGCCTCGACTACCTCCAGGAACGAGTAGGATCAGCAACTGTGGA GGCTATGCTGTCTAGATCAGCACCAGTCTTTTATGGCGATCTTAGAAGACATGAAAGGGTTCCAGTACCATTTTCAACCTTCATTAGCTTTTGCAAGCAA CGTGAACAGAACAGTGATGATAGTCGAGATTCTACACTTGTTAAGTTACAAGAGGGTGAGCTTCCAATTTCTGATACAAAGGAGGAATGCATACTTTCTG AGAATATGTCTCACCAAATCTACTTAGCACAGGTTTCCATTATGAATTCTGAGGACAAAAATAAAGTTCAACTCAAAGCTCTTAGGGATGACATTCAAGT GCTTCCATTTTTGGACACAAAAGAGTTGATGTCTATCAATTTGTGGATGAATAATGCTGAAGCTAGATCAAGTACTCATTACGATCCTCATCACAATGTT TTATGTATTGTTGCTGGCTGCAAAAAAGTTACCTTATGGCCTCCTTCTGCTACTCCTTCATTATATCCGATGCCTATATACGGGGAGGCCTCGAACCATA GTGCTGTAGCTCTGGAAGACCCTGATTTCTCATCATATCCAAGAGCAAAATACTCCATGGCTTATGGTCAGCAGGTTGTCCTCTCTGCAGGTGATGCTCT GTTCATTCCTGAAGGCTGGTTTCACCAAGTAGATAGTGACAATTTGACTCTTGCTGTAAACTTTTGGTGGCAATCCAACATAATGTGTAACATTTTGGAG CACATGGATTCATATTACTTGCGCAGAATAATGAGAAGATTGATGGAGAAAGAGATGCAGAACCAAGTCCTGGATGATCCATCATTAATCAATACAAGGA AAACGGAGAGTTACTCATCTGAGTTGACGGGTAATGGGAAAACAGATAGCAGTCACTTGCCCTTGGACCCGACTGATCAAAGTCGGGAGTTACCACAGGA GAACCAGCGGCAAGAAGTTAAACTGCATCAGTTGGAACAATGTACAGTTCAGGCCCTTCATGAACTGGTTTCGTTAGTACATAACCGTGTGAACCCTGAT CAAAGTCAAGACAACAGAATTGTGGCTGCCAACTTATATTTCCTAGAGGACGATCCAGTTGCTAAAATATTGTGGAGCCTTGATCCACAAACTCTCAGAA AGGTTTTTCTTGCAATGGTGAATAGTTTCCCAAGAACCTTGGAGGCTCTAGTACTACACTTGCTTTCTCCGGTAGGAGCTGAAGTCCTTACACGGAAGTT TGAAGAAATGGACCAGCAATCCACAGAAGTAAACCGAAACAAATTCTATGAGCAGTTCTATAGTGCGTTTGATGACCAATTTGCTGCGATGGATGCAATA CTCAATGGGAAAGAATCATTTGCTCTCCAGGCTTTCAAGGACACGCTGGAAAAATACATTGGAGTCCCTCCTGATTGA
AA sequence Show only first row Show all	>Lus10000493 pacid=23160457 polypeptide=Lus10000493 locus=Lus10000493.g ID=Lus10000493.BGIv1.0 annot-version=v1.0 MEEIKQLKINVFEQPPSAAVFASEIESKNVPAVFTGCIKNWRAYTSWDPANGGLDYLQERVGSATVEAMLSRSAPVFYGDLRRHERVPVPFSTFISFCKQ REQNSDDSRDSTLVKLQEGELPISDTKEECILSENMSHQIYLAQVSIMNSEDKNKVQLKALRDDIQVLPFLDTKELMSINLWMNNAEARSSTHYDPHHNV LCIVAGCKKVTLWPPSATPSLYPMPIYGEASNHSAVALEDPDFSSYPRAKYSMAYGQQVVLSAGDALFIPEGWFHQVDSDNLTLAVNFWWQSNIMCNILE HMDSYYLRRIMRRLMEKEMQNQVLDDPSLINTRKTESYSSELTGNGKTDSSHLPLDPTDQSRELPQENQRQEVKLHQLEQCTVQALHELVSLVHNRVNPD QSQDNRIVAANLYFLEDDPVAKILWSLDPQTLRKVFLAMVNSFPRTLEALVLHLLSPVGAEVLTRKFEEMDQQSTEVNRNKFYEQFYSAFDDQFAAMDAI LNGKESFALQAFKDTLEKYIGVPPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	0	1
AT1G76480			unknown protein		Lus10006035 [exp]	1.4	0.9446
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	2.8	0.9261
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	3.0	0.9194
AT5G65540			unknown protein		Lus10025712 [exp]	6.3	0.9082
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	6.7	0.9164
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	7.0	0.9135
AT2G36360			Galactose oxidase/kelch repeat...		Lus10043424 [exp]	9.5	0.8643
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	10.2	0.9061
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	10.6	0.9052
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	12.2	0.9152

Compare expression of checked genes

Lus10000493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.