Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28720 317 / 3e-108 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 313 / 1e-106 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 313 / 2e-106 YUC9 YUCCA 9 (.1) AT1G04610 310 / 3e-105 YUC3 YUCCA 3 (.1) AT2G33230 288 / 1e-96 YUC7 YUCCA 7 (.1) AT5G25620 242 / 7e-79 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 236 / 2e-76 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 229 / 1e-73 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT4G13260 214 / 7e-68 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G21430 173 / 2e-52 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022851 [exp] 448 / 1e-159 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 353 / 3e-122 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10023695 [exp] 324 / 1e-110 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10043142 [exp] 310 / 2e-105 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 308 / 2e-104 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10032608 [exp] 287 / 1e-98 AT1G04610 320 / 9e-109 YUCCA 3 (.1) Lus10043144 [exp] 248 / 2e-84 AT1G04610 284 / 1e-95 YUCCA 3 (.1) Lus10008092 [exp] 231 / 9e-75 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10024023 [exp] 231 / 1e-74 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254200 [exp] 369 / 2e-128 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.008G174600 [exp] 339 / 1e-116 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 304 / 9e-102 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.006G248200 [exp] 249 / 1e-81 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 249 / 3e-81 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 244 / 2e-79 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 236 / 2e-76 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 221 / 9e-71 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.005G186100 [exp] 168 / 1e-50 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.016G003300 [exp] 167 / 3e-50 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000494 pacid=23150907 polypeptide=Lus10000494 locus=Lus10000494.g ID=Lus10000494.BGIv1.0 annot-version=v1.0 ATGGAAGTCTCTTTCGATCTCGCCAACCACAACGCTTCTCCTTCCATGGTCGTTCGCAGCTCGGTCCACGTACTTCCGAGGGAAATCTACGGAAAATCGA CCTTCGAGCTAGCGGTCCTCCTAATGAGCTGGCTACCACTCTGGCTAGTCGACAAGATCCTCTTGATCTTGACATGGCTAGTAATGGGAAGCCTGAAATC CTACGGATTATCCCGGCCGTCCATCGGTCCACTAACTCTCAAAAACACCGAAGGGAAAACCCCTGTTCTCGACGTCGGAGCGCTACAGAGGATCAAATCC GGATCAATCAAAGTAGTCCCCGGGATCAAGAGATTCGGACAAGGAACGGTGGAGCTCATCAATGGAGAAATTCTCGAAATCGACTCGGTGGTGATGGCGA CCGGGTACAGAAGCAATGTTCCTTACTGGTTACAAGAGAGTGAGCTTTTCTCCAAGAACGGTTACCCTAAAGCTGCGTTCCCACATAGCTGGAAGGGAAA ATCGGGGCTTTACGCAGTTGGGTTCACGAAGAGAGGGCTCTCTGGTGCTTCTGCCGACGCTGTTAAGATCGCTAACGACATTGGTGAGGTGTGGAAGAAG GAGACTAAGCAGCAGAAACAGAGGAATACTGCCTGCCATAGGCGCTGCATTTCACAGTTCTAA
AA sequence Show only first row Show all	>Lus10000494 pacid=23150907 polypeptide=Lus10000494 locus=Lus10000494.g ID=Lus10000494.BGIv1.0 annot-version=v1.0 MEVSFDLANHNASPSMVVRSSVHVLPREIYGKSTFELAVLLMSWLPLWLVDKILLILTWLVMGSLKSYGLSRPSIGPLTLKNTEGKTPVLDVGALQRIKS GSIKVVPGIKRFGQGTVELINGEILEIDSVVMATGYRSNVPYWLQESELFSKNGYPKAAFPHSWKGKSGLYAVGFTKRGLSGASADAVKIANDIGEVWKK ETKQQKQRNTACHRRCISQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	0	1
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10042647 [exp]	1.0	0.9687
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	3.5	0.9430
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	5.1	0.9480
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10042162 [exp]	5.7	0.9120
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	6.0	0.9457
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	7.0	0.9358
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	7.7	0.9402
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10027679 [exp]	8.8	0.9396
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	9.8	0.9277
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001542 [exp]	12.0	0.9160

Compare expression of checked genes

Lus10000494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.