Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04140 871 / 0 Transducin family protein / WD-40 repeat family protein (.1.2) AT5G43930 777 / 0 Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G49660 71 / 8e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 67 / 4e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 65 / 5e-11 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 58 / 2e-08 TAF5 TBP-associated factor 5 (.1) AT5G23430 58 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 58 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 57 / 6e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 56 / 8e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022852 [exp] 830 / 0 AT1G04140 434 / 2e-142 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10003487 [exp] 66 / 4e-11 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 64 / 2e-10 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 64 / 6e-10 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 64 / 7e-10 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020214 [exp] 59 / 8e-09 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 58 / 2e-08 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 58 / 4e-08 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10004167 [exp] 57 / 4e-08 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254700 [exp] 1094 / 0 AT1G04140 905 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G193900 [exp] 1077 / 0 AT1G04140 904 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 68 / 6e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 67 / 8e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 66 / 4e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 63 / 8e-10 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 59 / 9e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 59 / 1e-08 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 58 / 2e-08 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 56 / 8e-08 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10000495 pacid=23150911 polypeptide=Lus10000495 locus=Lus10000495.g ID=Lus10000495.BGIv1.0 annot-version=v1.0 ATGTCCCGCGACTGCACTAATAAGGATATGTCCGGCCGTCTCCTGCCGCCAGATCAGAATTCTATCCAATCTGTTCGGTCCAGTAATTCTGCCCACAGGA AGAACGTTCTGCGGTTATTAGCGCAGAGGGAGATATGTCCTCGAGGGAAGCATGTGCCGAAGAAGGGGTGGGGAGAGGCTTCTCGTTGGAATGTTAATTC ACCATCGGAGCTGAAAAGTGAGCCGGCAAGAGATGCCAAACGTGATCTTATTTCATGGGTTGAGGCGGAATCATTGCGGCATTTATCGGCCAAATATTGT TCTCTGATGCCTCCTCCAAGGTCGACCATTGCGGCAGCTTTTAGTCCTGATGGGAAAACACTTGCATCGACGCATGGTGACCACACTGTCAAGATTATTG ATTGTCAAACTGGGAAGTGCTTGAAGGTGTTGACTGGTCATAGGAGAACCCCTTGGGTGGTTAGGTTTCATCCACTCCATCCGGAAATTCTTGCAAGCGG TAGCTTGGATCATGAAGTACGTTTGTGGGATGCTAAGACAGCAGAGTGCGTAGGATTTCGTGATTTTAGTCGTCCTATTGCATCCATTGCTTTCCACGCA GAGGGTCAATTGCTTGCTGTTGCGTCAGGTCACAAGTTATACATATGGCATTACGATAAAAGAGGGGAGGCCTCTTCGCCAACCGTTGTTTTGAGGACTA AGCGTTCTCTTAGAGCAGTGCATTTTCACCCTCATGCTGCCCCGTTCCTCCTGACAGCCGAGGTTAATGATCTTGACTCTTCAGATTCCTCGATGTCAAG GGCTACATCTCCAGGATACTTAAAATATCCTCCTCCTGCTGTTTTTGTGGCAAATGTTCAGTCCAGTGAACGTGTAAATGTTGCTGCTGAACTACCTCTT ATGTCCCTCCCTTCCTTGTTCATGCCTTCATTTTCTGTAGATGATACTAGATTAAATGATAATAGAGATGTTAGTTCAAGCACAATGCAAGTGGAGTCTT CTACTCCTATACGTGTCCAATTGGAGATGACCCCACAGATAGAGGCATACCCAGAAATAATTCCAGGCTCATTCCGGACTCTAAACAGTGGAGAAAGTAA TTACATTCCTACTAGAGTCGGAACGTCTGCTGGTGTTGAAGATGCCATGGAAACAGATGAAGTACCACATACGAGGACAAATCAACTAGAAATAAATGCT TTCATTGAAGGCAATACTGCTGCTGTTGGAGGTAATGCACAGGGCTCAGTTCAGCAGCATTTGACCGAGTTTGGGCAACTTAATCAGTTTTTTCCCCCAA GAGATCCGGTTTTGTGGGAGGTACCATTTTTGCAAGGATGGTTGATGGGGCAAAGCCAAGCTGGTCTTCCATCGATACTTCCACTTAATAGTGCTGGCCG AGAACACAGCAGTCAACTTTCCGGTCCTTCAGTTGCTCCTCATTTGTCTCAGTCCAACATGGATCCTTTAAGGGCCTCTCTTCCTATGCCTAGTAGTGCC AATATTTCTGGTGTTTCTGGTAGATCTGGTCTACGGTACCATGTTTTACGTTCTCGCTTCTCTGGGCCTGAATCTGGGGAAGGTGTGGCTCCTATCAGTA CTCAAAATAGTATCGATGCCCAACCAATTTTGAACAGAATTCAGTCTGAATTAGCTACATCAGCTGCAGCTGCAGCTACGGCAGAGCTTCCTTGTACTGT GAAACTGAGAGTGTGGTCACACGATAAACAACATCCTTGTACACTACTAAATGCAGAACGATGCCGCTTAACCATATCACATGCTGTCCTTTGCAGTGAG ATGGGTGCTCACTTTTCCCCTTGTGGAAGATATTTGGCTGCCTGTGTTGCATGCACTCTTCCCCATATGGAAGGTGATCCAGGATTACAAACATTAGTAC ATAATGATGCTGGAGCTGCAACGTCTCCTACTCGACACCCGATCTCTGCTCACCAAGTTATGTATGAGCTTCGGATATATTCCTTGGAGGAGGCAACTTT TGGCTCTGTGCTTGTATCCCGTGCAATTAGAGCTGCGCACTGTTTGACTTCTATACAGTTCTCTCCTACTTCTGAGCATATATTACTGGCTTATGGTCGC CGTCATGGGTCTCTTCTTAAGAGCATTGTTATCGATGGGGAGACGACATCACCAATTTACACGGTTTTGGAGGTCTACCGAGTTTCAGATATGGAACTTG TGAGAGTGCTTCCTAGTGCAGAGGACGAGGTTAATGTTGCTTGCTTTCATCCATTTGCCGGGGGAGGTCTAGTCTATGGAACCAAGGAGGGAAGGCTTAG GGTCTTGCAGTATGATAGTGCCCATGGATCGAATTGCTTTGGGCCAAATTACTTCACCGATGATAACTTGGCTGAGATCCGGACATATGCTCTGGAAGGT TAG
AA sequence Show only first row Show all	>Lus10000495 pacid=23150911 polypeptide=Lus10000495 locus=Lus10000495.g ID=Lus10000495.BGIv1.0 annot-version=v1.0 MSRDCTNKDMSGRLLPPDQNSIQSVRSSNSAHRKNVLRLLAQREICPRGKHVPKKGWGEASRWNVNSPSELKSEPARDAKRDLISWVEAESLRHLSAKYC SLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGKCLKVLTGHRRTPWVVRFHPLHPEILASGSLDHEVRLWDAKTAECVGFRDFSRPIASIAFHA EGQLLAVASGHKLYIWHYDKRGEASSPTVVLRTKRSLRAVHFHPHAAPFLLTAEVNDLDSSDSSMSRATSPGYLKYPPPAVFVANVQSSERVNVAAELPL MSLPSLFMPSFSVDDTRLNDNRDVSSSTMQVESSTPIRVQLEMTPQIEAYPEIIPGSFRTLNSGESNYIPTRVGTSAGVEDAMETDEVPHTRTNQLEINA FIEGNTAAVGGNAQGSVQQHLTEFGQLNQFFPPRDPVLWEVPFLQGWLMGQSQAGLPSILPLNSAGREHSSQLSGPSVAPHLSQSNMDPLRASLPMPSSA NISGVSGRSGLRYHVLRSRFSGPESGEGVAPISTQNSIDAQPILNRIQSELATSAAAAATAELPCTVKLRVWSHDKQHPCTLLNAERCRLTISHAVLCSE MGAHFSPCGRYLAACVACTLPHMEGDPGLQTLVHNDAGAATSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGR RHGSLLKSIVIDGETTSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGRLRVLQYDSAHGSNCFGPNYFTDDNLAEIRTYALEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	0	1
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	1.4	0.8965
AT2G32850			Protein kinase superfamily pro...		Lus10003916 [exp]	2.2	0.8692
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	2.8	0.8791
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	3.0	0.8830
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	3.2	0.8847
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10017147 [exp]	6.6	0.7938
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	6.9	0.8635
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	7.1	0.8331
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10022942 [exp]	7.1	0.7881
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	8.1	0.8253

Compare expression of checked genes

Lus10000495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.