Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43940 667 / 0 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 425 / 1e-147 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G24760 366 / 2e-124 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G64710 357 / 1e-120 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 349 / 1e-117 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G42250 324 / 5e-108 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 317 / 2e-105 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 301 / 4e-99 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 300 / 2e-98 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 110 / 2e-26 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022853 [exp] 760 / 0 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10029759 [exp] 412 / 2e-142 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 412 / 2e-142 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 410 / 2e-141 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 407 / 2e-140 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 390 / 3e-134 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10004786 [exp] 312 / 3e-103 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004785 [exp] 306 / 1e-100 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10031890 [exp] 303 / 4e-100 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254900 [exp] 677 / 0 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 667 / 0 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G072100 [exp] 433 / 6e-151 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 432 / 2e-150 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 430 / 1e-149 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 429 / 2e-149 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 429 / 3e-149 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 425 / 1e-147 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 425 / 1e-147 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 425 / 2e-147 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10000496 pacid=23150909 polypeptide=Lus10000496 locus=Lus10000496.g ID=Lus10000496.BGIv1.0 annot-version=v1.0 ATGGCGACTCAGGGAAAAGTTATCACATGCAAAGCTGCGGTGGCGTGGGAACCTAACAAGCCGCTGGTGATTGAGGACGTTCAGGTAGCTCCGCCTCAGG CTGGTGAGGTCCGCATCAAGATCCTTTTCACTGCTCTCTGCCACACTGATGCCTACACTTGGAGCGGCAAGGTAGCTTTCATTTACCTACCTCGTAATTG GAGGTTAGCTGGCCAGGTCACTATGTTTAGGGACTGTGCAGTTCAGTGGCTCGCTCTGTTCGGATCTGTGGACCCTGAAGGCCTCTTCCCTTGCATTCTT GGTCACGAGGCTGCTGGGATTGTTGAGAGTGTTGGGGAAGGTGTGACTGAGGTTCAACCTGGGGACCATGTCATCCCTTGTTACCAAGCTGAATGCAGAG AGTGCAAGTTTTGCAAGTCTGGGAAGACTAATCTTTGTGGCAAGGTCCGCGCAGCTACTGGTGTTGGGGTCATGATGACTGATCGCAAAAGCCGTTTTTC TGTGAATGGGAAATCGATATACCATTTCATGGGGACGTCTACGTTCAGCCAATATACTGTTGTCCATGATGTTAGTGTTGCGAAGATCGATCCAGCTGCT CCTCTTGACAAAGTATGCCTCCTTGGATGTGGTGTTCCCACAGGTCTTGGAGCTGTTTGGAACACAGCCAAAGTAGAGGCTGGATCAAATGTTGCCATTT TCGGCCTTGGTACCGTTGGCCTTGCAGTTGCGGAGGGTGCAAAAGCAGCTGGTGCTTCTCGCATCATTGGCATTGATATCGATAGTAAGAAGTTTGATAG AGCTATCATTTTCAGTGTTGATACTGAACGGGGTTTAGTATTGCAAAATTACTTGCATGACCATAAGCAATTGCACTGTGCAGCGAAGGATTTCGGAGTT ACGGAATTCGTGAACCCCAGCGAACATGAGAAACCAATCCAGCAAGTCCTCGTTGATCTTACTGATGGTGGCGTAGACTATAGTTTTGAGTGCATTGGGA ATGTTTCTGTAATGAGGGCTGCTTTGGAGTGCTGTCACAAGGGCTGGGGAACTTCAGTCATTGTGGGAGTAGCAGCATCCGGTCAAGAGATATCGACTCG TCCGTTCCAGTTGGTGACAGGCCGCGTCTGGAAGGGAACAGCCTTCGGTGGGTTCAAGAGTCGTTCCCAGGTGCCTTGGCTTGTCGAGAAGTACTTGAAA AAGGAGATCAAGGTCGACGAGTACATCACGCATAGCCTGACTTTGCCGGAGATCAACAAGGCGTTTGATCTGATGCATGAAGGAGGTTGCCTAAGGTGTG TGCTCGACTTGCAGGTCTAA
AA sequence Show only first row Show all	>Lus10000496 pacid=23150909 polypeptide=Lus10000496 locus=Lus10000496.g ID=Lus10000496.BGIv1.0 annot-version=v1.0 MATQGKVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKVAFIYLPRNWRLAGQVTMFRDCAVQWLALFGSVDPEGLFPCIL GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMTDRKSRFSVNGKSIYHFMGTSTFSQYTVVHDVSVAKIDPAA PLDKVCLLGCGVPTGLGAVWNTAKVEAGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAIIFSVDTERGLVLQNYLHDHKQLHCAAKDFGV TEFVNPSEHEKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLK KEIKVDEYITHSLTLPEINKAFDLMHEGGCLRCVLDLQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	0	1
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	1.0	0.9687
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10003076 [exp]	5.5	0.9417
AT1G73160			UDP-Glycosyltransferase superf...		Lus10032187 [exp]	6.2	0.9473
AT2G25670			unknown protein		Lus10017738 [exp]	7.5	0.9398
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	7.5	0.9277
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	7.7	0.9286
AT3G08650			ZIP metal ion transporter fami...		Lus10035606 [exp]	8.2	0.9527
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	9.2	0.9407
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	9.5	0.9403
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	9.6	0.9451

Compare expression of checked genes

Lus10000496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.