Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43940 130 / 7e-35 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 105 / 6e-26 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G32780 96 / 2e-22 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 93 / 2e-21 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 92 / 7e-21 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G24760 89 / 3e-20 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G22430 88 / 2e-19 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 86 / 1e-18 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 82 / 2e-17 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 43 / 0.0002 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000496 [exp] 125 / 2e-32 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10022853 [exp] 120 / 2e-30 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10042787 [exp] 105 / 1e-25 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 104 / 3e-25 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 103 / 4e-25 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 103 / 4e-25 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10031890 [exp] 97 / 1e-22 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10031319 [exp] 97 / 1e-22 AT5G24760 353 / 2e-135 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10033241 [exp] 93 / 4e-21 AT1G32780 511 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254900 [exp] 135 / 7e-37 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 132 / 6e-36 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.007G108601 [exp] 109 / 2e-27 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 109 / 3e-27 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 109 / 3e-27 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 108 / 5e-27 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 108 / 5e-27 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 107 / 1e-26 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 104 / 2e-25 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.011G152800 [exp] 103 / 6e-25 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10000497 pacid=23150912 polypeptide=Lus10000497 locus=Lus10000497.g ID=Lus10000497.BGIv1.0 annot-version=v1.0 ATGGATGGCAAAACAATTCATGTTCTTTTGTACATACTAAAAGTTACCTTTGCCTTCAACCACAAGTTAACTGCGAAATGGGTTGATTGGATGAGCATTT GTGGTGTGTCAATCTACCAAAAAGCCTTTTCATGTACTTTTGCTAGAAGCCCCAAATCTAGGCCCATTATAATCTCGAAGCTATTCAAACTTGACCCGGA AGGCCCAAACCGCTCACGTGCCGGATCCGGTTCTCTTGGGAGGCGGCTTGACAAACCAGACCAGTTTGACCAACCCAGCCTACCGAATCGGACCATATTA GTTGGCCAGGAACGACTATCCGTTCATTCTTGTGTTCAACTACTTTCACTCGCCACTTCCACTCTCCTCTTCACTCTCTTTTTGCTTTCTAACGCTCGGA TGGCGACTCAGGGCCAAGTCATCACCTGCAAAGCTGCGGTGTCGTGGGAACCTAACAAGCCGCTGGTGATCGAGGATGTTCAGGTAGCTCCGCCTCAGGC CGGCGAGGTCCGCATCAAGATTCTCTTCACTGCTCTCTGCCACACTGATGCTTACACTTTGGAGCGGCAAGGTCTTGGAGCTGTCTGGAACACAGCTAAA GTAGAAGCTGGGTCAAATGTTGCTATTTTTGGCCTTGATACTGTTGGCCTTGCAGTTGCGGAGGGTGCAAAAGCAGTTGGTGCTTCTCGCATTATCGGCA TTGACATTGATAGTAAAAAGTTTGAGAGAGCAAAGGACTTTGGAGTTACAGAATTTGTGAACCCAAAAGAACACAAGAAACCGATCCAGAATGAAATAGA GGTCGACGAGTACATCACGCATAGTCTGACACTGCCAGAGATCAATAAGGCTTTTGATCTATTGCATGAAGGAGGTTGCCTAAGGTGTGTTCTTGACTTG CAAGTCTAA
AA sequence Show only first row Show all	>Lus10000497 pacid=23150912 polypeptide=Lus10000497 locus=Lus10000497.g ID=Lus10000497.BGIv1.0 annot-version=v1.0 MDGKTIHVLLYILKVTFAFNHKLTAKWVDWMSICGVSIYQKAFSCTFARSPKSRPIIISKLFKLDPEGPNRSRAGSGSLGRRLDKPDQFDQPSLPNRTIL VGQERLSVHSCVQLLSLATSTLLFTLFLLSNARMATQGQVITCKAAVSWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTLERQGLGAVWNTAK VEAGSNVAIFGLDTVGLAVAEGAKAVGASRIIGIDIDSKKFERAKDFGVTEFVNPKEHKKPIQNEIEVDEYITHSLTLPEINKAFDLLHEGGCLRCVLDL QV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000497 [exp]	0	1

Compare expression of checked genes

Lus10000497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.