Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20310 119 / 6e-29 RIN13 RPM1 interacting protein 13 (.1) AT4G28690 105 / 3e-24 unknown protein AT4G27660 99 / 8e-24 unknown protein AT5G54150 92 / 1e-21 unknown protein AT5G54148 89 / 6e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025944 [exp] 171 / 7e-47 AT2G20310 143 / 1e-37 RPM1 interacting protein 13 (.1) Lus10014249 [exp] 168 / 7e-46 AT2G20310 141 / 7e-37 RPM1 interacting protein 13 (.1) Lus10015578 [exp] 88 / 3e-20 AT4G27660 111 / 2e-31 unknown protein Lus10032928 [exp] 87 / 1e-19 AT4G27660 122 / 4e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255400 [exp] 124 / 3e-30 AT4G28690 138 / 2e-35 unknown protein Potri.012G006501 [exp] 94 / 4e-22 AT4G27660 122 / 2e-35 unknown protein Potri.015G003200 [exp] 88 / 6e-20 AT4G27660 117 / 3e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000498 pacid=23150908 polypeptide=Lus10000498 locus=Lus10000498.g ID=Lus10000498.BGIv1.0 annot-version=v1.0 ATGAACAACCCTACACCGGTGGTGATTGACATCAGCTCGGACGACGAGTTCCAGCCGCCTGAAGATCCCATGCCGACGGCGGAGACTCTTGAGAAAGTCG ATGGAGAGAAGGACGCAAACGAAGCCGACGACAATAAGCTTTCCGAGTTGAAGCCGGCGAAAGATATTGACGAGGAGAAAGGTGACGACGATTGCTTGAT TTTGGACGGCGATCCGTACAGAACTGGTGAGCCGGCGAAGAATGTAGCAGTCGATGGAGATGATGTGCTTGTTGTAGGCGAAACAGGGCAGGTTGCTTGC AGAGACTACCCGCATTCTCGCCATCTCTGCGTCAAATTCCCGTTCAGTACTGCCCTGCATTCCGAGCATTGCAACCTGTGCCACTGTTACGTCTGCGATT TGCCTGCTCCCTGTGGAAATTGGGGTACCGGCTTACACAGCAACGACCACTGCCATGCTACTGATGCAAGCAAGGAGTGGAAAACTAAGAGGACGAGTTT CAGGGGCCTGAAAAAATGTGGTTCAGTAGCTCCTAACTCTCTTCCGAAAACTTCAGCACCTCGTACAAATATGGCAGCTAGCTGCCATGGTCAAGTTGGA AGGGCAACTGCGGTTCGAGCTTGGTCATCACAGCCCACTCATCTGGCAAGTAACTCGGTACCAACGGTGAGTACATTGTCAACTGGTCGTAGTCAAGTGC CAACTGCCCGTTTGGGAGGAATCTCGGTACAGATGGCGAGTTCAGCAGCTGGTCATGGTCAAGCCAGCAAGCCAACTGTGGTAACGAGGCCGAGTTTGGC AGCTGGTCATAGTCAAGTCAGCATGCCAGCTGCGGTTCGAGCTTGCTCATCAAGTGTACCAAGTACGATAGTGCAGAGCGGTACCGCGAGGGCAATGGAT ATTCAGTGGAGAAATGGATCGATGCCTCGAGAACCGGTACTTGGAACATTTCACTATACCAATTTAGGTCCAACGATTATTCCCCCGTTGACGAATCAAA TGTTTCATGGCAGTGGTGCTAATTTGAGTACTAATCAAGCTGCTTTCGGCACCTATCAAGTTCAGAAGTATGTTTATTATCCTCACGCAGCAGATTATGC GATGAACCGTCGGCAGAGGACTGCCCTATCTAAAGAAGCTACCATGGGTTCTACTACCCCTTTGCAGCAAAACCTTTTCGTAAACGCTCCGCCCTACCGA ATAGTTCCCTCGGTTGTGGCAAGGCAATCTCAGTCAGGTGAGCATCGGAGTACTGCCCTATCCAACAAAGTTGAAGCTGAACTCCGTTCACAGCATAACC TTGTTGCAAATTCTCCACGGGGCTTTCAATCGGGTGAGCAGAGAACTACCCTATCTAACAAGGTGACCGTGGGTTCTACTACTACTTTGGCTCGCGAATT CCCTTTGCAGCAAAATGTCATTGCAAATGCTCCGCCCTATCCATTCGGCAGTCCCCTTAGCCCACATGTTCGGCAGTCAAAGGTACCTCGAATCGGCGAT CAGACTACCAATGCCGCTGCTTCTGCTGCCACGACTTCATTTAGTCTACGCATTTAA
AA sequence Show only first row Show all	>Lus10000498 pacid=23150908 polypeptide=Lus10000498 locus=Lus10000498.g ID=Lus10000498.BGIv1.0 annot-version=v1.0 MNNPTPVVIDISSDDEFQPPEDPMPTAETLEKVDGEKDANEADDNKLSELKPAKDIDEEKGDDDCLILDGDPYRTGEPAKNVAVDGDDVLVVGETGQVAC RDYPHSRHLCVKFPFSTALHSEHCNLCHCYVCDLPAPCGNWGTGLHSNDHCHATDASKEWKTKRTSFRGLKKCGSVAPNSLPKTSAPRTNMAASCHGQVG RATAVRAWSSQPTHLASNSVPTVSTLSTGRSQVPTARLGGISVQMASSAAGHGQASKPTVVTRPSLAAGHSQVSMPAAVRACSSSVPSTIVQSGTARAMD IQWRNGSMPREPVLGTFHYTNLGPTIIPPLTNQMFHGSGANLSTNQAAFGTYQVQKYVYYPHAADYAMNRRQRTALSKEATMGSTTPLQQNLFVNAPPYR IVPSVVARQSQSGEHRSTALSNKVEAELRSQHNLVANSPRGFQSGEQRTTLSNKVTVGSTTTLAREFPLQQNVIANAPPYPFGSPLSPHVRQSKVPRIGD QTTNAAASAATTSFSLRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10000498 [exp]	0	1
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	4.5	0.6548
AT1G73040			Mannose-binding lectin superfa...		Lus10006866 [exp]	7.1	0.6628
AT5G24970			Protein kinase superfamily pro...		Lus10020103 [exp]	26.1	0.6354
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10011522 [exp]	33.3	0.6586
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10005274 [exp]	39.9	0.6520
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	41.6	0.6229
					Lus10003629 [exp]	59.3	0.6075
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	76.3	0.5952
AT1G52190			Major facilitator superfamily ...		Lus10009505 [exp]	83.1	0.5356
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10041935 [exp]	87.3	0.6018

Compare expression of checked genes

Lus10000498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.