Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20320 847 / 0 DENN (AEX-3) domain-containing protein (.1) AT5G35560 332 / 9e-102 DENN (AEX-3) domain-containing protein (.1) AT1G49040 62 / 1e-09 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022854 [exp] 1357 / 0 AT2G20320 852 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10033443 [exp] 273 / 1e-79 AT5G35560 856 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10017173 [exp] 214 / 1e-60 AT5G35560 456 / 2e-153 DENN (AEX-3) domain-containing protein (.1) Lus10040449 [exp] 58 / 3e-08 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10023563 [exp] 57 / 6e-08 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255500 [exp] 946 / 0 AT2G20320 906 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.006G143000 [exp] 315 / 5e-95 AT5G35560 879 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.012G060800 [exp] 57 / 4e-08 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.015G049500 [exp] 54 / 5e-07 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.018G065501 [exp] 0 / 1 AT5G35560 0 / 1 DENN (AEX-3) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0330 [flax] [poplar] AVL9 PF02141 [flax] [poplar] DENN DENN (AEX-3) domain CL0330 [flax] [poplar] PF03455 [flax] [poplar] dDENN dDENN domain CL0431 [flax] [poplar] PF PF03456 [flax] [poplar] uDENN uDENN domain
Representative CDS sequence Show only first row Show all	>Lus10000499 pacid=23150910 polypeptide=Lus10000499 locus=Lus10000499.g ID=Lus10000499.BGIv1.0 annot-version=v1.0 ATGAATTCGAATCACAGGAGGGAAGGAGACAAGAGGAAGCAATTAGAGTCGCCGTCGTCGCCGCCGCCGGGGAGAAAGGCCGGGGAGAAAGTTCAGGGTG GTGAGCCGCAGTCGCCGGCGGCTTCACCGCAGCAGCACCGTCGGAGTCAGAGCGAAGTGTTGACCAAGGATGGGAAAAGGAGCAGCAGTTTCCAGAAGTT GATGCAGAAAGCTTGGCAATGGGGTGGTAATTCGAGAGAGCAAGGGTTTGTACCAAGCTTCAATCCTGAGGTTTTGGCTAACCAGAAACGGCAGTGGTAT CAGCTTCATCCTAAATCTACGGACCATATAAGTTATAAGGAGCCAACCTCGCTATACGAAAACTTTGTTGTTACGGGACTCAGACCGGAGACTGATCTAC ATACCGTGGAGGAGGCATTTGCGAGGAGGAAGAAGTGGGAGTTGGTGGAAACGAGATCAGGAGCTAAGGACATTAAGGCGGTTCGGAATCGAGCCCCTGC ATTTCCAACTATGGAGCCTCAGCTGCTCTTTAAATATCCTCCTGGAAAGAAATTACCCATGCGCTTGAAAGATTTGGGTGCTTTTTGTTTCCCTACCGGT GTTAAGCCGCGGTTGCTGGAGAGAACGCCTTCTCTCAGCGAGCTGAATGAACTTGTTTATGGACAGGGACATTTGGGGAGAGATGATTTGTCATTTGTTT TTTCGCTTAAGGTAGCTGACAACGACACATTATACGGTGTGTGCTTGCATACAACCGAGTTCGTCCAGAGACCACTTGGTATCTTAGGCTCCTCGTCACC TCTTTCTTCATCTAGACGCTGTGGCCGTTTTCTAGTTTCCGCGCCTCGTTGTTACTGTCTGCTAACAAGAGTACCTTTCTTTGAGCTACACTACGAGATG CTGAACAGCATTATTGCACAGGAGCGTTTAAACAGGATAACACAGTTTCTCGGCGAACTATCGTTCAATAGCTGCGTCCCTTCATTCGGTAGACAACCTT CTCAAATGAACGGTTACCAGGATCAGTTGGATGACTCTGACTGGATGGCCTCGGCTATACCGGTTGAAAGTGCTATAGCACTTACCGCTGCTGCTGCAGG ACTTGCGGTGGACGATGATTCTTCTTCACAAAGAACATCGGAACCTCATTCTCCCGAGAGTATTGCTGCTAGCGCTGCTAGCGAGACTTCTGATTTTAGT CAAACGAGGGATAGTGACAAGGATGGCAGTAAAAGTTTGAACTCCTTTGACGATGGTTATTCAGACTCTTCCGAAGCTCGTTCGGATGCTTTCGACCGTC TATATGGAAGCTACGACAATGGTCATGCTTCTCCGGATGTTGGACTCTATTCTTGCGCAAGGAGTCCCGAGCTGGAGCGTATTCCAAGTTTTGATGCACT TTTCAGTCCAGTAAGAAGCATGACATCCGAGGACGACGATGATGATGAAATGTTTGCCAACCATGGCAAAGATTTCGAGAATGATGTAATAGTGGAGTGG GCAAAGGAGAACAAGAACGATTTGTTGCTGATAATTTGTAGTTATCATGCTATGGCTATCCCTGATAGAGGAGGGAAGTTGGTTTTCCAGCCTCTCGATC ATTTACCTGCTGTGGAGTATAATCGACCTCATGTCTCGTCGCTTGCCAATTCTCGAAGCTTTGTAGATGCATTTAATGCTGTTGAGGTCAATGCGAAATT AGCTGCTGCGGAGGAAGCTTTTTCTCTAGCAGTATGGACAACTACAACTATTTGCCGCGTACTGTCACTTGAGAGTATTTTGACTCTGGTTGCGGCAGTT TTGCTTGAGAAACAAGTAATAGTAATGTGCCCAAACTTGGGTGTTCTGTCTGCTGTGGTGTTGTCTCTGATTCCGTTGATTCGTCCATTTCAATGGCAAA GTTTATTCCTTCCTGTTTTGCCAGATAAGATGTATGATTTTCTTGATGCTCCAGTTCCTTTTATTGCTGGAATACAAGTTAAACCTGGTGAAGTGAGGAT AAAAACATCCAACCTCGTCATCGTTAATGTGCTCAGCGACCAGGTGAAATCATGTCAATTGCCTACTCTTCCTAAATACAAAGAGCTCTTCTCCGAACTC CGGCCAGTTCATGCTAAACTATCACAACAAAATGCAACAGGAAACAAGAATCCAGTGTATAGGTGCAACGAAGTGCAGGCTGATGCAGCAAACCACTTCT TGAGAGTCATAAGGCGCTACTTGGAATCCATCTGTGCAGATTTGAGGTCACATACGATAACTAGCGTACAGTCTAACCATGACAGGGTTTGTTTGCTTCT TAAAGATAGTTTTATCGATTCCTTCCCTTACAAGGAACGACCATTCATTAAGCTGCTAGTAGACACACAACTGTTTGCTTCTCTATCGGACAGCCGATTG ACAACGTTTGAGAGTGGGAGGTTTTAG
AA sequence Show only first row Show all	>Lus10000499 pacid=23150910 polypeptide=Lus10000499 locus=Lus10000499.g ID=Lus10000499.BGIv1.0 annot-version=v1.0 MNSNHRREGDKRKQLESPSSPPPGRKAGEKVQGGEPQSPAASPQQHRRSQSEVLTKDGKRSSSFQKLMQKAWQWGGNSREQGFVPSFNPEVLANQKRQWY QLHPKSTDHISYKEPTSLYENFVVTGLRPETDLHTVEEAFARRKKWELVETRSGAKDIKAVRNRAPAFPTMEPQLLFKYPPGKKLPMRLKDLGAFCFPTG VKPRLLERTPSLSELNELVYGQGHLGRDDLSFVFSLKVADNDTLYGVCLHTTEFVQRPLGILGSSSPLSSSRRCGRFLVSAPRCYCLLTRVPFFELHYEM LNSIIAQERLNRITQFLGELSFNSCVPSFGRQPSQMNGYQDQLDDSDWMASAIPVESAIALTAAAAGLAVDDDSSSQRTSEPHSPESIAASAASETSDFS QTRDSDKDGSKSLNSFDDGYSDSSEARSDAFDRLYGSYDNGHASPDVGLYSCARSPELERIPSFDALFSPVRSMTSEDDDDDEMFANHGKDFENDVIVEW AKENKNDLLLIICSYHAMAIPDRGGKLVFQPLDHLPAVEYNRPHVSSLANSRSFVDAFNAVEVNAKLAAAEEAFSLAVWTTTTICRVLSLESILTLVAAV LLEKQVIVMCPNLGVLSAVVLSLIPLIRPFQWQSLFLPVLPDKMYDFLDAPVPFIAGIQVKPGEVRIKTSNLVIVNVLSDQVKSCQLPTLPKYKELFSEL RPVHAKLSQQNATGNKNPVYRCNEVQADAANHFLRVIRRYLESICADLRSHTITSVQSNHDRVCLLLKDSFIDSFPYKERPFIKLLVDTQLFASLSDSRL TTFESGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20320			DENN (AEX-3) domain-containing...		Lus10000499 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10023344 [exp]	3.0	0.9417
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10027998 [exp]	10.2	0.9147
AT1G27752			Ubiquitin system component Cue...		Lus10007753 [exp]	13.6	0.9095
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	15.4	0.9319
AT4G40050			Protein of unknown function (D...		Lus10012756 [exp]	18.9	0.8980
AT5G52450			MATE efflux family protein (.1...		Lus10041994 [exp]	34.6	0.9263
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10038049 [exp]	41.5	0.9192
AT2G02370			SNARE associated Golgi protein...		Lus10007583 [exp]	62.9	0.9146
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10035348 [exp]	79.2	0.9093
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10013198 [exp]	82.3	0.9126

Compare expression of checked genes

Lus10000499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.