Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47770 86 / 3e-21 ATTSPO TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037513 [exp] 302 / 2e-106 AT2G47770 86 / 4e-21 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Lus10010281 [exp] 69 / 8e-15 AT2G47770 126 / 6e-37 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025200 [exp] 126 / 4e-37 AT2G47770 111 / 6e-31 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Potri.002G206100 [exp] 96 / 4e-25 AT2G47770 179 / 3e-57 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Potri.014G131400 [exp] 94 / 3e-24 AT2G47770 156 / 3e-48 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03073 [flax] [poplar] TspO_MBR TspO/MBR family
Representative CDS sequence Show only first row Show all	>Lus10000500 pacid=23174704 polypeptide=Lus10000500 locus=Lus10000500.g ID=Lus10000500.BGIv1.0 annot-version=v1.0 ATGGCGAATCATCAGCACGGCAGAAAGTCCAACGTCCACCGCCGGCGATTCACATGTCTTCCACCTTGGGCGATCGCACTGTTTCCACTGCTCATAACCG CCGCATCCATCCACTCTTTCGGTTCGAGCAGGAAGTTCGATGTGCTGCCCAAACCGGTCTGGTTCCCCCCATTGTGGCTGATTCACGTCTTGTCGCTTGG TTCGACCGTGCTCATGAGCATGGCCGCTCTGATGGTTCAGGCTAAGCGTGGGTTGAGCGGCGACGATTTGCATCTCTACTGCTGCCAGGTTGGGTTGAGC GTTCTCTGGTGTCCGCTCGTGGTTAGGATCGGCGCTGGTTTGGTCGGTTCGGTTTACACTTGCGTTCACATCGGGTCATTACTGGGCTGCTTCTGGGTCT TTGGGAAGGAAAGCCCAGCTACGAGGAAGTTAGTTGGGCCTTGTTTGGGCTGGGCTGCGTTTCTGGCGTTGTGTACGTTTAAGCTTGTCCGTGATTCGGA GATCTCTAGTTTAGTGGATTTGGCTAAGTTGTTTGGCGGGCTTCTCGCTGGATGA
AA sequence Show only first row Show all	>Lus10000500 pacid=23174704 polypeptide=Lus10000500 locus=Lus10000500.g ID=Lus10000500.BGIv1.0 annot-version=v1.0 MANHQHGRKSNVHRRRFTCLPPWAIALFPLLITAASIHSFGSSRKFDVLPKPVWFPPLWLIHVLSLGSTVLMSMAALMVQAKRGLSGDDLHLYCCQVGLS VLWCPLVVRIGAGLVGSVYTCVHIGSLLGCFWVFGKESPATRKLVGPCLGWAAFLALCTFKLVRDSEISSLVDLAKLFGGLLAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10000500 [exp]	0	1
					Lus10028295 [exp]	11.4	0.6670
AT4G39420			unknown protein		Lus10008760 [exp]	16.2	0.6546
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10038344 [exp]	21.1	0.6540
AT1G50660			unknown protein		Lus10002072 [exp]	22.4	0.6478
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10005334 [exp]	25.2	0.6303
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10031393 [exp]	28.6	0.5952
AT5G66930			unknown protein		Lus10000838 [exp]	32.2	0.6301
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10032302 [exp]	33.1	0.6351
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	34.1	0.6100
					Lus10043052 [exp]	35.5	0.6263

Compare expression of checked genes

Lus10000500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.