Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16565 268 / 3e-91 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2) AT1G50200 52 / 9e-08 ACD, ALATS Alanyl-tRNA synthetase (.1.2) AT5G22800 50 / 3e-07 EMB86, EMB263, EMB1030 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003337 [exp] 54 / 3e-08 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10022640 [exp] 52 / 1e-07 AT5G22800 1455 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10017408 [exp] 46 / 1e-05 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10010210 [exp] 42 / 0.0002 AT1G50200 1511 / 0.0 Alanyl-tRNA synthetase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G024900 [exp] 271 / 2e-92 AT3G16565 338 / 2e-118 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2) Potri.009G141300 [exp] 58 / 1e-09 AT5G22800 1437 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Potri.005G094300 [exp] 44 / 4e-05 AT1G50200 1535 / 0.0 Alanyl-tRNA synthetase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain CL0040 [flax] [poplar] tRNA_synt_II PF01411 [flax] [poplar] tRNA-synt_2c tRNA synthetases class II (A)
Representative CDS sequence Show only first row Show all	>Lus10000503 pacid=23174700 polypeptide=Lus10000503 locus=Lus10000503.g ID=Lus10000503.BGIv1.0 annot-version=v1.0 ATGGAATCCAACTCCTTTGTTCCAACAAAGCTAGACTACTACGATGAGATGCAGAGACTTGATTCCAATGCCAAACTCCTCTCCTTCTACAGAGGACAAG ACGGGAGGGAGACGCTGATATTGGATGCCACAATCTTCCACCCACAAGGCGGCGGCCAGCCGGCGGACACCGGCTTCATCACCGCCGCGGCATTCAAATT CACTGTACAAGATGTTCGCTCCAAGGATGGAATTGTTTATCACTACGGTATCATGGAGGAAGAAGATTCCCACAAGGGAATCATGGAAGGGTCTGAGGTT AGGTTACACGTTGACGAAGCAAGAAGGAAGCTTAATTCCAGGCTGCATTCAGCCGGACATCTGTTGGATGCTTGTCTACCAAAAGTTGGATTAGGGCATT TGAAGCCAGGCAAAGCATACCATTTCCCTGATGGGTGGAATGTTGGATGGAATTTAGATGGCAATGAGAAAGTAATTGCGGCGGTTCTGTCATATGAGGA AGCATGTGAATGGTGTGGAGGTTCCGTTCCTGAGTACATTCCCAAGGGAAGCAATCCTAGAGTAGTGAAGTTAGGGGACAGCCCTGGATGTCCTTGTGGA GGTACCCATGTTTCTGATCTCTCAGAAATTGCAAGTTTGAAGCATAATGACAGAGAGATTGTGGAATGA
AA sequence Show only first row Show all	>Lus10000503 pacid=23174700 polypeptide=Lus10000503 locus=Lus10000503.g ID=Lus10000503.BGIv1.0 annot-version=v1.0 MESNSFVPTKLDYYDEMQRLDSNAKLLSFYRGQDGRETLILDATIFHPQGGGQPADTGFITAAAFKFTVQDVRSKDGIVYHYGIMEEEDSHKGIMEGSEV RLHVDEARRKLNSRLHSAGHLLDACLPKVGLGHLKPGKAYHFPDGWNVGWNLDGNEKVIAAVLSYEEACEWCGGSVPEYIPKGSNPRVVKLGDSPGCPCG GTHVSDLSEIASLKHNDREIVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	0	1
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	1.4	0.9327
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	3.2	0.9321
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10039391 [exp]	4.9	0.9229
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	5.3	0.9197
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	5.5	0.9277
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	6.3	0.9165
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	7.4	0.9157
AT3G47570			Leucine-rich repeat protein ki...		Lus10043368 [exp]	7.9	0.8836
AT4G31860			Protein phosphatase 2C family ...		Lus10026885 [exp]	8.3	0.8817
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	8.8	0.9200

Compare expression of checked genes

Lus10000503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.