Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15780 294 / 1e-100 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33120 233 / 1e-76 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04750 232 / 3e-76 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT1G04760 232 / 4e-76 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 232 / 3e-75 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT2G33110 184 / 2e-57 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT3G54300 184 / 6e-57 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT5G22360 100 / 4e-25 ATVAMP714 vesicle-associated membrane protein 714 (.1) AT4G32150 98 / 3e-24 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G11150 96 / 1e-23 ATVAMP713 vesicle-associated membrane protein 713 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038166 [exp] 238 / 2e-78 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 238 / 2e-78 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 237 / 6e-78 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 235 / 2e-77 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 226 / 6e-74 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 225 / 2e-73 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 222 / 3e-72 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 221 / 1e-71 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 218 / 2e-70 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G209100 [exp] 306 / 2e-105 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.003G177700 [exp] 239 / 3e-79 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 229 / 3e-75 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 225 / 2e-73 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 224 / 4e-73 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 224 / 4e-73 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.010G239900 [exp] 176 / 4e-54 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 174 / 2e-53 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.009G018900 [exp] 102 / 4e-26 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.001G219200 [exp] 100 / 4e-25 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10000504 pacid=23174698 polypeptide=Lus10000504 locus=Lus10000504.g ID=Lus10000504.BGIv1.0 annot-version=v1.0 ATGAATCAGGAGTCGTTCATCTACAGCTTCGTTGCCCGAGGCACCGTGGTGCTAGCTGAGTACACAGAGTTCACCGGCAACTTCCCGGCGATCGCTGCTC AGTGCCTTCAGAAATTGCCTTCCGGTAACGACAAGTTCACCTACAACTGCGACCACCACACCTTCAATTTCCTCGTTGAGGATGGTTACGATATGGTAAT CCTTGACTGGATTGAATTGTTGTTTGATCAAAATCCTTTGACGGTTGAGATTGAGACTTTGGATGCTTACCATAATTTTGTTGTGTTGCATGTAGCTTAT TGTGTAGTTGCCAAGGATACGCTGAGCAAGCAAATCTCTATTGCATTTTTGGAACGTATGAAGGCAGACTTTAGGAAAAGATATCGAGGTGGTAAAGCTG ACACGGCTATCCCCAAAAGTCTCAATAAGGAATTTGGGCCAATTATGAAAGAGCATATGAAGTATATTGCGGATCATGCTGAAGAGATTGAGAAGTTGCT CAAAGTAAAAACTCAAGTCTCTGAAGTCAAAAGCGTAATGTTAGGGAACATTGACAAGGCGATCGAGAGAGGAGAGAACATAACCAATCTTGTTGACAAG ACCGAGAATCTGCGTGATCAGTCCATTAGGCACTGCTTCAAAAAAGGTGGGAAAGAAACTGCCGGCCAGGAAAGGAACGACATCGTTTATCTTGAGACAG GACAGGAGGTATGCTGCATTTCCAGTTTGGCAGGAGAAACATTCAGGTTTATAGGAAAAATGTACATGCTTCAAAGAGCTGGAAAAGAGGGGCGATTAAT CCTTTCAAATTTTGCGTCAACCTACCAGCGACCGGATGATGGATTTTCCTTCTTCAGTCAGCATCCGAAATTAGTCTTGACGGCCTACAATGATTTCTTG TCTATATGA
AA sequence Show only first row Show all	>Lus10000504 pacid=23174698 polypeptide=Lus10000504 locus=Lus10000504.g ID=Lus10000504.BGIv1.0 annot-version=v1.0 MNQESFIYSFVARGTVVLAEYTEFTGNFPAIAAQCLQKLPSGNDKFTYNCDHHTFNFLVEDGYDMVILDWIELLFDQNPLTVEIETLDAYHNFVVLHVAY CVVAKDTLSKQISIAFLERMKADFRKRYRGGKADTAIPKSLNKEFGPIMKEHMKYIADHAEEIEKLLKVKTQVSEVKSVMLGNIDKAIERGENITNLVDK TENLRDQSIRHCFKKGGKETAGQERNDIVYLETGQEVCCISSLAGETFRFIGKMYMLQRAGKEGRLILSNFASTYQRPDDGFSFFSQHPKLVLTAYNDFL SI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Lus10000504 [exp]	0	1
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	8.7	0.8567
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	9.9	0.8501
AT4G34660			SH3 domain-containing protein ...		Lus10028783 [exp]	11.7	0.8390
AT4G34150			Calcium-dependent lipid-bindin...		Lus10019826 [exp]	17.3	0.8357
AT3G48860			unknown protein		Lus10036015 [exp]	27.5	0.8455
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10031612 [exp]	33.2	0.8444
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	40.7	0.8309
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10001648 [exp]	47.6	0.8289
AT3G62270			HCO3- transporter family (.1)		Lus10009995 [exp]	47.9	0.8157
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024448 [exp]	52.6	0.7697

Compare expression of checked genes

Lus10000504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.