Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24860 142 / 1e-45 ATFPF1, FPF1 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) AT5G10625 132 / 1e-41 unknown protein AT4G31380 130 / 1e-39 FLP1 FPF1-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037510 [exp] 218 / 3e-75 AT5G24860 139 / 4e-44 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10020156 [exp] 149 / 4e-48 AT5G24860 180 / 4e-60 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10026956 [exp] 145 / 3e-46 AT5G24860 174 / 5e-58 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10040802 [exp] 104 / 5e-30 AT4G31380 95 / 2e-25 FPF1-like protein 1 (.1) Lus10016534 [exp] 38 / 0.0002 ND 37 / 2e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G209300 [exp] 189 / 4e-64 AT5G24860 140 / 1e-44 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Potri.010G024500 [exp] 186 / 1e-62 AT5G24860 139 / 4e-44 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Potri.006G276100 [exp] 150 / 2e-48 AT5G10625 167 / 5e-55 unknown protein Potri.018G005200 [exp] 144 / 6e-46 AT5G10625 165 / 2e-54 unknown protein Potri.009G031600 [exp] 129 / 5e-40 AT5G24860 114 / 6e-34 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000506 pacid=23174697 polypeptide=Lus10000506 locus=Lus10000506.g ID=Lus10000506.BGIv1.0 annot-version=v1.0 ATGTCGGGGGTGTGGGTGTTCAAGAACGGCGTCGTACGGCTGGTGGAGAATCCAGGGAGTGAGTCGTCGTCGATGGGGAGCAGGGCGAGGAAGGTGTTGG TACACGCGCCGACCAACGAAGTGATAACATCGTACGCCGTCCTGGAGAGGAAGCTGTCGGAGCTAGGGTGGGAGAGGTACTACGACGACCCGGATCTGCT ACAGTTCCACAAGAGATCAACGGTGCACCTCATCTCCCTCCCGAAGGACTTCTCAAGGTTCAAGTCCATGCACATGTACGACATCGTCGTCAAGAACCGC CACATGTTCGAAGTTCGCGACCACTAA
AA sequence Show only first row Show all	>Lus10000506 pacid=23174697 polypeptide=Lus10000506 locus=Lus10000506.g ID=Lus10000506.BGIv1.0 annot-version=v1.0 MSGVWVFKNGVVRLVENPGSESSSMGSRARKVLVHAPTNEVITSYAVLERKLSELGWERYYDDPDLLQFHKRSTVHLISLPKDFSRFKSMHMYDIVVKNR HMFEVRDH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10000506 [exp]	0	1
AT1G51340			MATE efflux family protein (.1...		Lus10027367 [exp]	7.3	0.8183
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10006042 [exp]	7.5	0.8831
					Lus10038232 [exp]	16.3	0.8713
					Lus10010378 [exp]	18.3	0.8653
					Lus10001746 [exp]	18.4	0.7448
					Lus10022802 [exp]	19.6	0.8439
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10003432 [exp]	24.3	0.7875
AT2G36650			unknown protein		Lus10014389 [exp]	26.2	0.8498
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	28.3	0.8477
AT4G05400			copper ion binding (.1.2)		Lus10035454 [exp]	30.8	0.7748

Compare expression of checked genes

Lus10000506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.