Plant FIBer expression Database

Lus10000507 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15770 329 / 8e-117 RNA binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037509
[exp]
384 / 3e-138 AT4G15770 325 / 3e-115 RNA binding (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G024400
[exp]
309 / 5e-109 AT4G15770 303 / 1e-106 RNA binding (.1)
Potri.008G209600
[exp]
302 / 4e-106 AT4G15770 299 / 6e-105 RNA binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0178 PUA PF03657 UPF0113 UPF0113 PUA domain
Representative CDS sequence
>Lus10000507 pacid=23174702 polypeptide=Lus10000507 locus=Lus10000507.g ID=Lus10000507.BGIv1.0 annot-version=v1.0
ATGAGGCCGCTAGACGAGGCAGAGACGACCGCCGTCTTCGAGAAGCTCCTGAAGTTCATGGGCAACAACCTGAAGAACCTCGTCGAGAACCCGGCGCACG
AGGGGCCCGAGCAGAACCCAGGCCGCTACTGCTTCCGCCTGCAGAAGAACCGCGTCTTCTACGTCAGCGAGTCGCTGGTGAAGCGCGCAACGAACATCAG
CAGGAAGAACCTGGTGGCTATGGGGATCTGCGTCGGCAGGTTCACTCACGTCGGCAAGTTCCACCTCACTGTCCAGTGCCTGAACCTGCTGGCAGCCAAC
GCCAAGCACAAGGTGTGGCTCAAGCCTACCGCAGAGATGTCGTTCCTGTACGGTAACCACGTCCTGAAGGGAGGCGTCGGAAGGATCACCGACAGCATCG
CTCCCGGCGACGGCGTGGTGGTGTTCTCCATGTCCGATATTCCGCTAGGGTTCGGGAACGCGGCGAAGTCGACTCAGGATTCCATGAAGCTGGACCCGAA
CGGAATTGTGGTTCACCACCAGTCGGATATCGGTGAGTATTTGAGGATGGAGGATGATCTTTGA
AA sequence
>Lus10000507 pacid=23174702 polypeptide=Lus10000507 locus=Lus10000507.g ID=Lus10000507.BGIv1.0 annot-version=v1.0
MRPLDEAETTAVFEKLLKFMGNNLKNLVENPAHEGPEQNPGRYCFRLQKNRVFYVSESLVKRATNISRKNLVAMGICVGRFTHVGKFHLTVQCLNLLAAN
AKHKVWLKPTAEMSFLYGNHVLKGGVGRITDSIAPGDGVVVFSMSDIPLGFGNAAKSTQDSMKLDPNGIVVHHQSDIGEYLRMEDDL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G15770 RNA binding (.1) Lus10000507
[exp]
0 1
AT1G05600 EMB3101 EMBRYO DEFECTIVE 3101, Tetratr... Lus10030200
[exp]
2.0 0.8432
AT1G54380 spliceosome protein-related (.... Lus10011880
[exp]
2.4 0.8427
AT1G71730 unknown protein Lus10029741
[exp]
2.6 0.8141
AT1G54380 spliceosome protein-related (.... Lus10022813
[exp]
3.2 0.8263
AT5G24840 tRNA (guanine-N-7) methyltrans... Lus10020164
[exp]
4.9 0.8377
AT3G10090 Nucleic acid-binding, OB-fold-... Lus10017293
[exp]
5.2 0.8061
AT5G60670 Ribosomal protein L11 family p... Lus10026506
[exp]
6.7 0.8398
AT4G17520 Hyaluronan / mRNA binding fami... Lus10040157
[exp]
7.5 0.7609
AT3G05560 Ribosomal L22e protein family ... Lus10026555
[exp]
8.4 0.8057
AT5G24510 60S acidic ribosomal protein f... Lus10008944
[exp]
8.5 0.8095

Lus10000507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.