Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34110 1372 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 828 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 799 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 721 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 702 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 611 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 604 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 568 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 565 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 561 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017782 [exp] 1777 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 796 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 752 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 743 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 737 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10032954 [exp] 722 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 555 / 2e-180 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 551 / 2e-179 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000814 [exp] 539 / 6e-175 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198000 [exp] 1504 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 1500 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 813 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 808 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 793 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 779 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 738 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 738 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.015G080800 [exp] 736 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 730 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000509 pacid=23180048 polypeptide=Lus10000509 locus=Lus10000509.g ID=Lus10000509.BGIv1.0 annot-version=v1.0 ATGCAAATCCAGGAAATGGGTCAGTACTCTGTTCTGCTACTCCTGATTCCACTCCTTATTGTCACAGTTTCCCCCCTTTCCCCTGAAGGCCAAGCCCTCC TCCCTCTACTTTCATCTTCATCTTCATCATGGAACCCTTTGGACCAAACCCCATGTTCATGGAAAGGTATTACATGCTCTGCTGATAAGAGAGTCATTTC TCTCTCTCTTCCACACACTTTCCTCAACCTCACTTCAATCCCTTCCCTTATCTCTTCCTTAACATATCTCCAGCTACTAAATCTATCTTCCACTAACATC TCCGGACAAATCCCTCCTTCCTTAGGCCAACTCTCTAACCTCAGGCTTCTTGACCTATCTTCCAACTCCCTCTCTGGCTCAATCCCTCAAGAACTCGGCA AACTTTCCTCCCTTCAGTTTCTCTACTTGAACTCCAACAGGTTATCGGGACAAATCCCTCCACAGATCTCCAATCTCACTTCTCTACAACTTCTTTGCCT CCAGGACAACTTGTTCAACACTTCAATCCCTTCTCAATTCGGCTCACTGGTCTCTTTACAACAGTTGAGAGTTGGGGGTAACCCATATCTGACAGGGGAG ATTCCTCATCAGCTAGGGATGCTGTCCAATTTGACCACATTCGGGGCAGCCGCTACTCGACTTTCTGGTTGGATTCCTTCCACTTTTGGCAACTTGGTTA ATCTCCAGACGCTGGCTCTTTACGATACTGAGGTCTCTGGGTCTATTCCTGCTCAACTTAGTGAATGTTCTGAGTTGAGGAACTTGTATTTGCATATGAA TAAGCTCACTGGCTCTATCCCTTCCGAGTTGGGTAAGCTACAGAAGCTCACAAGCTTGCTTCTTTGGGGGAATGCCCTATCTGGGTCTATTCCTTCTCAG CTTTCCAATTGTTCATCTCTGGTTGTGCTCGATGCCTCTGCTAATGATCTATCTGGTTCGATTCCTGGCGATTTGGGGAAGTTGGGAGCATTGGAACAGC TACATTTTTCGGATAATTCCCTTACTGGGTTGATTCCCAGACAGTTGAGTAACTGTACCAGCTTGACTGCACTTCAGCTGGATAAGAACCAGTTGTCTGG CACTATTCCAATGGAGGTTGGGAATTTGAACTACTTGCAGAGCTTTTTCTTGTGGGGGAACTCGGTTTCGGGTACTATTCCATCTTCTTTTGGGAACTGT ACTGAGCTGTATGCACTTGATTTATCAAGGAATAAGCTCACTGGGTTGATTCCAGGGGAGATTTTTGGATTGCAGAAACTTAGTAAGCTTCTGTTGTTGG GGAACTCATTATCAGGAGGGCTGCCGAAAAGCGTAGCAAATTGTCAGTCTTTGGGGAGGTTAAGACTTGGAGAGAACCAACTCTCTGGTCAGATTCCAAA AGATATTGGCTTACTGCAGAATCTGGTTTTCCTTGACTTGTATATGAATCATTTCTCAGGTCCACTTCCTTGTGAGATTGCCAATGTAACAGTTCTTGAG CTGTTGGATGTGCACAACAACCACATAACTGGCGACGTTCCTTATCAGTTAGGTCAGCTAGTGAACTTGGAGCAACTTGATCTTAGTAAGAACAGCTTTA CCGGAGAAATACCACCGAGTTTTGGTAACTTGAGCTACTTGAACAAGCTGATCCTCAGCAACAATCTGCTTACCGGGATGATCCCTGGTTCAATCCGATA CTTGCAGAAGCTAACATTGCTTGATTTGAGCTCCAACAATTTTTCTGGTTATCTCCCACCAGAGATTGGATATGTCACCAGCTTGACAATAAGTCTGGAC TTGAGCAACAATGCATTTGCTGGAGAGCTTCCAAGCACAATGTCTGGATTGACACAGCTGCAGTCTCTTGATCTTTCCAGTAACATGCTTTTTGGAACAA TTAAGGTTCTTGAATCCCTCACCAGCCTTGCCTCTTTAAATGTCTCCCGCAACAATTTCTCAGGTCCTATCCCTATCACACCATTTTTCAGAACATTGTC TCCAAATTCCTATCTTGAGAATCTGAGGCTCTGTGAATCCCTGGATGGCATTACTTGCTCATCTAGACTTGTAAGGAGAAATGGATTGAAATCGGCAAAA GCTATTGCATTGATAACAGTGATTATAGCTTCTTTAACTCTAGCAATAGTTGCATCATGTATTGTAGTCTCAAGGAACCACCACAGATACATGGTGGATA AAGATGCGTCGGTGGTTTCTTCTCTGGGAGCTGAAGACTTCTCATATCCTTGGACTTTTATCCCATTTCAGAAGCTCAACTTTGCCATTGATAACATCCG GGAATGCTTGAAGGATGAGAATGTGATTGGGAAAGGCTGTTCAGGAGTTGTCTACAAGGCCGAAATGCCCAGTGGTGAACTAATTGCAGTGAAAAAGCTC TGGAAAACAAAGAAAGAAGACGACATAGTATTTGATTCATTTGCGGCAGAGATTCAAATACTGGGGCACATTCGACACAGAAACATAGTGAAGCTTTTGG GGTATTGTTCCAACAAAAGTGTTAAACTCTTACTTTACAACTACATATGCAATGGCAATCTGCAGCAGCTGTTGCAAGACAACAGGAACTTAGAGTGGGA GACAAGGTACAAGATTGCTGTTGGATCAGCTCAAGGACTGGCTTACCTTCACCACGATTGCGTCCCAGCAATCCTCCACCGTGATGTCAAATGCAACAAC ATACTTCTAGATTCCAAGTACGAAGCATATCTGGCTGATTTTGGCCTTGCCAAGCTCATGAACTCTCCAAATTACCACCATGCCATGTCCCATGTTGCCG GTTCTTATGGATACATTGCTCCAGAGTATGGATACACCATCAACATTACAGAAAAAAGCGATGTGTACAGCTACGGGGTGGTGTTGCTAGAGATATTAAG TGGGAGGTGTGTTGTTGAGCCACAGATTGGAGATGGACTGCACATTGTTGAATGGGTGAAGAAAAAGATGGGGAGCTACGAACCAGCCTCATCAATACTC GACGTAAAGCTTCAAGGGCTGCCAGATCAAATTGTACAAGAAATGCTTCAGACACTTGGGATTGCAATGTTTTGTGTGAACTCTTCGCCTGCAGAGCGGC CGACAATGAAAGAAGTGATTGCATTGTTGATGGAAGTGAAGAGCACACCTGAAGAATGGGGGAAGGGTACTTCTCAGCCTCTAATAAAACAGTCAGCAAC CCAGAGCTGA
AA sequence Show only first row Show all	>Lus10000509 pacid=23180048 polypeptide=Lus10000509 locus=Lus10000509.g ID=Lus10000509.BGIv1.0 annot-version=v1.0 MQIQEMGQYSVLLLLIPLLIVTVSPLSPEGQALLPLLSSSSSSWNPLDQTPCSWKGITCSADKRVISLSLPHTFLNLTSIPSLISSLTYLQLLNLSSTNI SGQIPPSLGQLSNLRLLDLSSNSLSGSIPQELGKLSSLQFLYLNSNRLSGQIPPQISNLTSLQLLCLQDNLFNTSIPSQFGSLVSLQQLRVGGNPYLTGE IPHQLGMLSNLTTFGAAATRLSGWIPSTFGNLVNLQTLALYDTEVSGSIPAQLSECSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNALSGSIPSQ LSNCSSLVVLDASANDLSGSIPGDLGKLGALEQLHFSDNSLTGLIPRQLSNCTSLTALQLDKNQLSGTIPMEVGNLNYLQSFFLWGNSVSGTIPSSFGNC TELYALDLSRNKLTGLIPGEIFGLQKLSKLLLLGNSLSGGLPKSVANCQSLGRLRLGENQLSGQIPKDIGLLQNLVFLDLYMNHFSGPLPCEIANVTVLE LLDVHNNHITGDVPYQLGQLVNLEQLDLSKNSFTGEIPPSFGNLSYLNKLILSNNLLTGMIPGSIRYLQKLTLLDLSSNNFSGYLPPEIGYVTSLTISLD LSNNAFAGELPSTMSGLTQLQSLDLSSNMLFGTIKVLESLTSLASLNVSRNNFSGPIPITPFFRTLSPNSYLENLRLCESLDGITCSSRLVRRNGLKSAK AIALITVIIASLTLAIVASCIVVSRNHHRYMVDKDASVVSSLGAEDFSYPWTFIPFQKLNFAIDNIRECLKDENVIGKGCSGVVYKAEMPSGELIAVKKL WKTKKEDDIVFDSFAAEIQILGHIRHRNIVKLLGYCSNKSVKLLLYNYICNGNLQQLLQDNRNLEWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNN ILLDSKYEAYLADFGLAKLMNSPNYHHAMSHVAGSYGYIAPEYGYTINITEKSDVYSYGVVLLEILSGRCVVEPQIGDGLHIVEWVKKKMGSYEPASSIL DVKLQGLPDQIVQEMLQTLGIAMFCVNSSPAERPTMKEVIALLMEVKSTPEEWGKGTSQPLIKQSATQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	0	1
AT5G20045			unknown protein		Lus10019440 [exp]	2.4	0.9378
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	2.8	0.9316
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	3.9	0.9380
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	5.2	0.8888
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	7.7	0.8953
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	8.7	0.9316
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	9.8	0.9221
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	10.5	0.9316
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	10.6	0.9171
AT5G43060			Granulin repeat cysteine prote...		Lus10014087 [exp]	11.2	0.8948

Compare expression of checked genes

Lus10000509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.