Plant FIBer expression Database

Lus10000510 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024087
[exp]
0 / 1 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1)
Lus10041632
[exp]
0 / 1 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G192600
[exp]
45 / 1e-05 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1)
Potri.001G032400
[exp]
43 / 5e-05 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1)
Potri.003G192650
[exp]
42 / 9e-05 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1)
PFAM info
Representative CDS sequence
>Lus10000510 pacid=23147717 polypeptide=Lus10000510 locus=Lus10000510.g ID=Lus10000510.BGIv1.0 annot-version=v1.0
ATGTGTCCTTCACTAGACCCTTCTCCGCCATCACCATCAGGTACGGCGGCAGCTTTATCCCTTTCATCTCCGGAGCATATATCGGCCCCATCAGACACGT
TATTGGATGGTCCTTTATGGACTCCACCGGCAGCGCCAATTCCAAGAACCTGTCCACCATATCCAGAGTCAGCATCTATGATTCAGGCTGCTCCATCTCG
GATCTGCTCCATCTCGGATCTGCTCCTCTGCGACCGCACAAACCCTGGGTGGATTGGAATTGCTCGAGCCAGCTTGAACGAACTGAATTCCGGCGCCGCC
GTCGATCTGGTCTTCTCTTTGTGTCACTGGTTCGCTGGTGGAAGGAGGCAAATCAGAGGTGTTGTTCGTATTTGGTACTTGACACGCCTACAACCTATCT
ACCTTGAAGATGTCAGTCAATCCCTCAATCATATGATCTTGGCAAATTCGGTTGTCCCGTGGTTACCAAATGTTGTGTTTGAAGGAGATTATCAATTGTT
GGAGCTGGCATTGGTTCAAGATGAGGGTGATGTTACTCAGTATGGGGAAGTGATGTCCTATATTTTGATGCTGTCTTTTGGAGGTTATTGTTATTAA
AA sequence
>Lus10000510 pacid=23147717 polypeptide=Lus10000510 locus=Lus10000510.g ID=Lus10000510.BGIv1.0 annot-version=v1.0
MCPSLDPSPPSPSGTAAALSLSSPEHISAPSDTLLDGPLWTPPAAPIPRTCPPYPESASMIQAAPSRICSISDLLLCDRTNPGWIGIARASLNELNSGAA
VDLVFSLCHWFAGGRRQIRGVVRIWYLTRLQPIYLEDVSQSLNHMILANSVVPWLPNVVFEGDYQLLELALVQDEGDVTQYGEVMSYILMLSFGGYCY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000510
[exp]
0 1
Lus10022031
[exp]
2.0 0.8948
AT1G21240 WAK3 wall associated kinase 3 (.1) Lus10013387
[exp]
2.0 0.9191
AT1G70670 AtCLO4 Arabidopsis thaliana caleosin ... Lus10041446
[exp]
6.3 0.8923
AT3G61180 RING/U-box superfamily protein... Lus10012427
[exp]
12.7 0.8645
AT3G07490 AtCML3, AGD11 calmodulin-like 3, ARF-GAP dom... Lus10020389
[exp]
13.8 0.8676
AT5G47070 Protein kinase superfamily pro... Lus10001088
[exp]
14.1 0.8718
AT4G22758 unknown protein Lus10000386
[exp]
15.2 0.8732
Lus10029977
[exp]
15.4 0.8926
AT5G53550 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) Lus10022358
[exp]
18.8 0.8354
AT5G38700 unknown protein Lus10002433
[exp]
19.9 0.8877

Lus10000510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.