Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10450 214 / 3e-67 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT1G73270 214 / 9e-67 SCPL6 serine carboxypeptidase-like 6 (.1) AT1G73300 210 / 2e-65 SCPL2 serine carboxypeptidase-like 2 (.1) AT5G36180 206 / 9e-64 SCPL1 serine carboxypeptidase-like 1 (.1) AT2G22920 206 / 1e-63 SCPL12 serine carboxypeptidase-like 12 (.1.2.3) AT1G73280 204 / 4e-63 SCPL3 serine carboxypeptidase-like 3 (.1) AT2G22970 199 / 2e-61 SCPL11 serine carboxypeptidase-like 11 (.1.2.3) AT5G09640 197 / 3e-60 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT2G22990 193 / 3e-60 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT2G23000 195 / 1e-59 SCPL10 serine carboxypeptidase-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007731 [exp] 239 / 2e-76 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 226 / 5e-67 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10007732 [exp] 162 / 8e-47 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10012718 [exp] 156 / 4e-45 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10010895 [exp] 149 / 8e-42 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10009562 [exp] 144 / 6e-39 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10025859 [exp] 140 / 3e-38 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 139 / 4e-37 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 136 / 1e-36 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124900 [exp] 235 / 8e-75 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 195 / 4e-59 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 187 / 4e-56 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290900 [exp] 187 / 6e-56 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 185 / 2e-55 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 184 / 7e-55 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 162 / 4e-47 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.014G177500 [exp] 140 / 1e-38 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 136 / 8e-37 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.001G291450 [exp] 94 / 4e-23 AT2G22960 149 / 3e-45 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10000511 pacid=23147716 polypeptide=Lus10000511 locus=Lus10000511.g ID=Lus10000511.BGIv1.0 annot-version=v1.0 ATGCATGCTAAGTGGCTCGTGGATCATGAAGAATTCTCGTGGAATCCAGTATACATTGGTGGTGACTCCTACGCTGGCATTCCTATCCCAGGCGTAGCTC TTCGAATCGCCCATGGGTTATTTGGTTGGAATGGTCGAGCAAATGCAACCATTGAACACAATTCCAAGATCAAATTCGCTCATGGAATGGAGCTCATTTC AGATGACCTCTATGAGTCCTTGAGACGAAGTTGCGCTGGAGAATACTTCAACATAGATCTCAGCAATTCACAATGCCTCAAATATGTAGCAGAATTAAAC AAGTGTACATCAGGGTTGGCTCAGGCGCACATCTTATTGCCAAAGTGCACATACGCTTCCCCAAAACCAAATACATTATTATCGTCATTGGAATCTGCTG CGATAAGGTCTCTCGAGGAAGACATGAAGAATCCAACGGCGCCTAAATCAGGAGAAGCAGAGGAGCCTCCTCCCACGCTTGGCTGTCCTACATTTGCGTA TATACTTCCAAAATACTGGGCCAATGACGAAGCCGTCCAAACGGCCTTGCATGTTAGAAAGGGAAACATAGGGATATGGGAGAGATGCTGTTCAAGTGGA GATCATGATATGTTTGTTCCGTACGTGGGCACGCTGGAATGGATCAAAAGTCTGAATTTCAGGATTGTAGAAGAATGGAGGTCTTGGCTAGTAAACAACC AAGTTGCTGGATACACCAGGACTTACTCTCATCTAGCACACTTCAATCTCATTACATTTGCGACTATCAAGGATGGAGGACACACAGCTCCCGAATACAA ACCCCCCTGA
AA sequence Show only first row Show all	>Lus10000511 pacid=23147716 polypeptide=Lus10000511 locus=Lus10000511.g ID=Lus10000511.BGIv1.0 annot-version=v1.0 MHAKWLVDHEEFSWNPVYIGGDSYAGIPIPGVALRIAHGLFGWNGRANATIEHNSKIKFAHGMELISDDLYESLRRSCAGEYFNIDLSNSQCLKYVAELN KCTSGLAQAHILLPKCTYASPKPNTLLSSLESAAIRSLEEDMKNPTAPKSGEAEEPPPTLGCPTFAYILPKYWANDEAVQTALHVRKGNIGIWERCCSSG DHDMFVPYVGTLEWIKSLNFRIVEEWRSWLVNNQVAGYTRTYSHLAHFNLITFATIKDGGHTAPEYKPP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10000511 [exp]	0	1

Compare expression of checked genes

Lus10000511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.