Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55530 333 / 1e-115 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT1G04790 73 / 2e-14 RING/U-box superfamily protein (.1) AT3G58720 71 / 4e-14 RING/U-box superfamily protein (.1.2) AT1G35625 65 / 2e-12 RING/U-box superfamily protein (.1) AT1G55530 66 / 5e-12 RING/U-box superfamily protein (.1) AT4G26400 65 / 9e-12 RING/U-box superfamily protein (.1.2) AT3G13430 63 / 2e-11 RING/U-box superfamily protein (.1.2.3) AT1G35630 63 / 2e-11 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT2G17730 62 / 2e-11 NIP2 NEP-interacting protein 2 (.1.2) AT1G71980 63 / 3e-11 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002706 [exp] 436 / 4e-156 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10004977 [exp] 304 / 5e-104 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10001568 [exp] 298 / 2e-101 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10023671 [exp] 70 / 4e-13 AT1G04790 232 / 7e-67 RING/U-box superfamily protein (.1) Lus10006074 [exp] 67 / 3e-12 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 66 / 4e-12 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10020258 [exp] 65 / 1e-11 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10002637 [exp] 65 / 1e-11 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10016936 [exp] 65 / 1e-11 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201500 [exp] 337 / 6e-117 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.009G034700 [exp] 325 / 2e-112 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.003G176500 [exp] 72 / 6e-14 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 65 / 3e-12 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 63 / 3e-12 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 64 / 8e-12 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 65 / 1e-11 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 64 / 2e-11 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.019G082500 [exp] 64 / 2e-11 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.013G111500 [exp] 64 / 3e-11 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10000513 pacid=23158772 polypeptide=Lus10000513 locus=Lus10000513.g ID=Lus10000513.BGIv1.0 annot-version=v1.0 ATGAGTTTTGTTTTCCGAGGGAACAGAGCTGAATTAGATTTAGAAAATGGCTTTCCTGGATTCGTCCCTGAGCGCCGAGCAATGCGGGTTCACCCGACTC GGCCAGTTAATTCCAACTCACTTGTATTCCTCGTCACAGTTATATTGTTGTTCATGATATTGAACTCGCACCAAATGCCTCCTAATTTTCTGCTTTGGTT GGTGCTTGGGGTATTTCTAATGGCCACAATCCTAAGAATGTATGCAACTTGTCAACAATTGCAAGCTCAAGCGCAAGCTCATGCTGCTATAACTAGTGGG CTTCTTGGCCATACCGAATTAAGGCTGCATATGCCGCCTCCCATAGCACTTGCAACCAGAGGACGTTTGCAGGGGCTCAGGCTCCAGCTTGCTCTTCTCG ATAGAGAATTTGACGATCTGGATTATGAAACTTTGAGGGCACTGGATTCTGATGTGGTTCCCACTACATCAATGAGCGAGGAAGAGATAAATGCTCTTCC TGTTCACAATTATAAGGTGTCGGGTTCTCAAAGTTCGGTCCCTTCAGTTTCAGTACAACAAGCATCATCTTCCATTCAAGTAGAGCCAAAGAAGGAGACA TGCTCTGAGGTCGGAAACTTGAAGGTTACAGAAGATGAACTAACTTGCAGCGTGTGCTTGGAACAAGTTGACGTTGGAGAAGTCATACGTACCCTCCCAT GCTTGCATCAGTTCCATGCGATTTGTATAGATCCATGGTTGAGGCAACAGGGAACATGCCCAGTTTGCAAGTATAGGGCAGGATCCAGCTGGCCTGAAAA TGGACAAGGTGCCGATGCTTCTTACATGGTTTAG
AA sequence Show only first row Show all	>Lus10000513 pacid=23158772 polypeptide=Lus10000513 locus=Lus10000513.g ID=Lus10000513.BGIv1.0 annot-version=v1.0 MSFVFRGNRAELDLENGFPGFVPERRAMRVHPTRPVNSNSLVFLVTVILLFMILNSHQMPPNFLLWLVLGVFLMATILRMYATCQQLQAQAQAHAAITSG LLGHTELRLHMPPPIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDVVPTTSMSEEEINALPVHNYKVSGSQSSVPSVSVQQASSSIQVEPKKET CSEVGNLKVTEDELTCSVCLEQVDVGEVIRTLPCLHQFHAICIDPWLRQQGTCPVCKYRAGSSWPENGQGADASYMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	0	1
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10035313 [exp]	3.7	0.8118
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	4.5	0.7969
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	4.6	0.8217
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	4.8	0.8430
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10021492 [exp]	5.5	0.7881
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	7.1	0.8198
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	7.3	0.8140
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	9.4	0.8418
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	13.0	0.7671
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10024198 [exp]	14.0	0.7578

Compare expression of checked genes

Lus10000513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.