Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39710 520 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G02190 451 / 8e-158 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT5G37540 224 / 2e-69 Eukaryotic aspartyl protease family protein (.1) AT1G66180 221 / 2e-68 Eukaryotic aspartyl protease family protein (.1) AT2G03200 127 / 6e-33 Eukaryotic aspartyl protease family protein (.1) AT1G01300 124 / 1e-31 Eukaryotic aspartyl protease family protein (.1) AT3G54400 122 / 6e-31 Eukaryotic aspartyl protease family protein (.1) AT3G25700 117 / 3e-29 Eukaryotic aspartyl protease family protein (.1.2) AT3G61820 111 / 7e-27 Eukaryotic aspartyl protease family protein (.1) AT1G09750 104 / 1e-24 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002707 [exp] 708 / 0 AT2G39710 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10040279 [exp] 599 / 0 AT2G39710 566 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10004713 [exp] 598 / 0 AT2G39710 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024375 [exp] 473 / 7e-167 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010854 [exp] 275 / 2e-92 AT5G02190 294 / 4e-99 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010855 [exp] 187 / 2e-53 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003999 [exp] 132 / 1e-34 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10039503 [exp] 116 / 2e-29 AT3G54400 477 / 3e-169 Eukaryotic aspartyl protease family protein (.1) Lus10002612 [exp] 116 / 1e-28 AT5G33340 393 / 5e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058000 [exp] 559 / 0 AT2G39710 607 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G201400 [exp] 538 / 0 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087600 [exp] 480 / 2e-169 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 236 / 3e-74 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 219 / 2e-67 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087550 [exp] 196 / 6e-62 AT5G02190 234 / 8e-76 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 134 / 3e-35 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 124 / 1e-31 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 124 / 1e-31 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 122 / 5e-31 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10000514 pacid=23158770 polypeptide=Lus10000514 locus=Lus10000514.g ID=Lus10000514.BGIv1.0 annot-version=v1.0 ATGGTGATGGACACCGGAAGCGAGCTCTCCTGGCTCCATTGCCGCAAAACCACAGGACTCAATTCGGTTTTCAACCCGCTAGCTTCCAAGTCCTACGCCA AGGTCCCCTGCGTTTCGCCCACTTGCCGCACCCGTACCCGAGATCTATCCATACCCGTTTCCTGCGACGCCGCCAAGCTCTGCCACGTCACCGTCTCTTA CGCCGACGCCACTTCAATCGAAGGGAACCTCGCTTACGAGACGTTCCGAATCGGGTCCATGACCCGACCGGCTACCCTGTTCGGGTGTATGGACTCGGGT TTCAGCTCCAACTCCGAAGAGGACGCTAAATCCACCGGGTTAATGGGTATGAACCGAGGCTCGCTTTCGTTCGTTAATCAAATGGGATACCCCAAATTCT CCTACTGTATCTCCAGCTTGGACTCGTCGGGTGTTTTGCTTCTCGGCGACGCGAGTTTCTCCGGGATGAAGCCGCTCAGGTACACTCCCATGGTCAAAAT CAATAACCCGTACCCGTTGCCGTACTATGACCGGGTAGCGTACACGATCCAGCTGGAGGGTATAAAGGTAAACAACAAAGTATTAACCATACCGAAATCA GTTTTCCAGCCAGACCATACGGGTGCTGGTCAAACCATGGTTGATTCGGGTACCCAGTTCAGTTTCTTACTAGGCCCTGCCTACACAGCCCTTAGAACAG AGTTCCTCTCCCAGACGAGGAGGATTTTGAGGGTTGTGAATGATCCGAACTACTTGTTTCAATCGGCGATGGATTTATGCTACTTAATCGAATCAAACCG GAAGGTTCCTCCGGTTGGGTTGCCGGTTGTGACGCTGATGTTCCAAGGAGCGGAGATTAGTGTTTCGGGTGAGAAGTTGTTGTACCAGGTGCCCGGTGGA GCGCAGGGGAAAGATTCGGTGTGGTGCTTCACATTCGGGAGCTCGGATTTGCTAGGGATCGAGGCGTTTGTGATCGGGCATCACCATCAGCAGAACGTAT GGATGGAGTACGATCTGGCTAGGTCTCGGATTGGTATCGCGGAAGTCAAGTGTGACGACGCTGGGCGACAGCTTGGTTTACATGCTTAA
AA sequence Show only first row Show all	>Lus10000514 pacid=23158770 polypeptide=Lus10000514 locus=Lus10000514.g ID=Lus10000514.BGIv1.0 annot-version=v1.0 MVMDTGSELSWLHCRKTTGLNSVFNPLASKSYAKVPCVSPTCRTRTRDLSIPVSCDAAKLCHVTVSYADATSIEGNLAYETFRIGSMTRPATLFGCMDSG FSSNSEEDAKSTGLMGMNRGSLSFVNQMGYPKFSYCISSLDSSGVLLLGDASFSGMKPLRYTPMVKINNPYPLPYYDRVAYTIQLEGIKVNNKVLTIPKS VFQPDHTGAGQTMVDSGTQFSFLLGPAYTALRTEFLSQTRRILRVVNDPNYLFQSAMDLCYLIESNRKVPPVGLPVVTLMFQGAEISVSGEKLLYQVPGG AQGKDSVWCFTFGSSDLLGIEAFVIGHHHQQNVWMEYDLARSRIGIAEVKCDDAGRQLGLHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39710			Eukaryotic aspartyl protease f...		Lus10000514 [exp]	0	1
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10034193 [exp]	2.6	0.7986
AT3G21570			unknown protein		Lus10012773 [exp]	7.7	0.8202
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10032848 [exp]	12.9	0.8174
AT5G42050			DCD (Development and Cell Deat...		Lus10032412 [exp]	16.4	0.8113
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	16.7	0.8078
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	16.8	0.8139
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	21.0	0.7780
AT3G14470			NB-ARC domain-containing disea...		Lus10000417 [exp]	23.5	0.7385
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	26.5	0.8003
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10023684 [exp]	30.5	0.7648

Compare expression of checked genes

Lus10000514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.