Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29200 233 / 1e-66 APUM1 pumilio 1 (.1) AT2G29190 223 / 4e-63 APUM2 pumilio 2 (.1.2) AT2G29140 216 / 8e-61 APUM3 pumilio 3 (.1) AT3G10360 91 / 5e-19 APUM4 pumilio 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002708 [exp] 789 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10040782 [exp] 263 / 4e-77 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10016513 [exp] 238 / 6e-68 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10004976 [exp] 155 / 9e-40 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10001567 [exp] 139 / 2e-34 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 100 / 1e-21 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 93 / 2e-19 AT3G10360 928 / 0.0 pumilio 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201100 [exp] 451 / 4e-148 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G058300 [exp] 436 / 1e-142 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.001G243400 [exp] 276 / 1e-81 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.009G034900 [exp] 272 / 2e-80 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.008G036500 [exp] 103 / 9e-23 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 93 / 2e-19 AT3G10360 868 / 0.0 pumilio 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10000515 pacid=23158769 polypeptide=Lus10000515 locus=Lus10000515.g ID=Lus10000515.BGIv1.0 annot-version=v1.0 ATGGTATCGGATACGCACCCGAACATTCTGCCCGACATCTCAATGCGACCAGTCCTCAAGAATGAGGATTTGGGCAAATTGATTAGAGAACAGCGGCTGG GGGCGAGCAATAGGGAGGAAGAGCTCGACATTTACCGGAGTGGGTCTGCGCCTCCGACAGTAGAAGGCTCCTTGAACTCAATCGGAGGTCTGCTCGGGAA GAATGGAAAAGGCGGTTTCTTAAGTGAAGAAGAGTTAAGGTCTGATCCAGCATATGTTAATTACTACTATTCTAATGCTAACGTCAATCCGAGGTTGCCG CCTCCTTTTTTGTCTAAGGAGGACTGGAGATTCTCGCAGAGAATCAACGGTGCGAATTCCGTGGTTGGTGATCGAAGGAAAGTAAGTATCGAAGGGAATA GGTCTCTCTTTGCGATGCAGCCAGGGTTTTTCGGAGGAGGCAATGAAGAGAAGACAGGGAATGGAAGTGAGTGGGGAGGAGATGGGCTTATTGGTCTCCC TGGGTTAGGCCTTGGAAGTAGGCAAAGAAGTATAGCTGAGATGATTCAGGACGACTTGGGTCATTCGAATCCTGTTTCAAGGCATCCATCACGTCCTGCT AGCCGCAACACATATGATGATGATGTTGAAGCTTCTCAATCCCATTTTTCTCAGCTTCACGGTATGACATCTCTGGATTCTGTGCACTCAAGCTCCAATC CGCTTGGTGTGCCAGCTGTTGGGTCATCATCTTCGCATAGCTATGCTTCTGCACTTGGTGCCTCCTTGTCGCGAAGCACTACACCTGACCCCCAGCTGAT ATCTAGGGCTCCTAGTCCTCGTATTTCACCTATTGGAGGAGCTAGAATCAATTCCTTTGATAAAAGAGATGTGAGTGGCGGCTTAAACTCATTTAATGGG GTCACATCGAACTTGGGTGAACGTGCTGACCTTGTTGCTGCTTTTTCTGGGTTGAATATGTCAAATGGTACGACAAGATCACAAAGTCAGCCTGAGATTG ATGATCACCATGACTTTTTTAATTTGCATGGGGACCAAAAACATGCCAAGCAGCCGCCATATATAAACAAGTCAATGGGATCTGCCAACTCATACCTGAA AGGGCCATCCACTCCACCTCTAAATGGCAGAGGAAGCTCTCCTAATCACCAACACATGGATCACTTAAATTCCCCATTTGCAAGTTATGGTGGTAGTGGG TATCCTGGAAGTCCTTCTTCTCCATCTATGATGGGAGGAGGTCAGCTGGGCAATGGGACTTTGCCACCTCTGTTTGAGAACGCTGCTGCAAGTGCTATGG GAGGACTGGGGTTAGATTCTAGAATGTTAGGTGGTTTAGAACCTAATCTATTGGCTGCTGCTGCAGATCTACAGAACCTTGGTAGAGTTGGGAATCAGAC TACTGGTAATTCCCTGCAGATGCCTCATGTGGATCCTCTTTATCTACAGTACCTAAGATCAAATGAATACGCTGCTGCACAGATTGCTGCTCTCTCTGAA TCAACTATGGATAGGGAGTACCTCGGCAATTCATACATGGATCTGCTTCAAAAAGCTTATCTTGAATCTCTGCTTCCCTCTCCAAAATATCAGGTAGCCC TGGAAGACACAGTGAACGAAATTTGCGTTTTTCATCTGGATTGA
AA sequence Show only first row Show all	>Lus10000515 pacid=23158769 polypeptide=Lus10000515 locus=Lus10000515.g ID=Lus10000515.BGIv1.0 annot-version=v1.0 MVSDTHPNILPDISMRPVLKNEDLGKLIREQRLGASNREEELDIYRSGSAPPTVEGSLNSIGGLLGKNGKGGFLSEEELRSDPAYVNYYYSNANVNPRLP PPFLSKEDWRFSQRINGANSVVGDRRKVSIEGNRSLFAMQPGFFGGGNEEKTGNGSEWGGDGLIGLPGLGLGSRQRSIAEMIQDDLGHSNPVSRHPSRPA SRNTYDDDVEASQSHFSQLHGMTSLDSVHSSSNPLGVPAVGSSSSHSYASALGASLSRSTTPDPQLISRAPSPRISPIGGARINSFDKRDVSGGLNSFNG VTSNLGERADLVAAFSGLNMSNGTTRSQSQPEIDDHHDFFNLHGDQKHAKQPPYINKSMGSANSYLKGPSTPPLNGRGSSPNHQHMDHLNSPFASYGGSG YPGSPSSPSMMGGGQLGNGTLPPLFENAAASAMGGLGLDSRMLGGLEPNLLAAAADLQNLGRVGNQTTGNSLQMPHVDPLYLQYLRSNEYAAAQIAALSE STMDREYLGNSYMDLLQKAYLESLLPSPKYQVALEDTVNEICVFHLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	0	1
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	5.3	0.9044
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039423 [exp]	6.7	0.8925
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	9.4	0.9072
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10000653 [exp]	11.3	0.8555
AT4G30100			P-loop containing nucleoside t...		Lus10033462 [exp]	11.5	0.8957
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000873 [exp]	13.7	0.8720
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	14.5	0.8730
AT2G25730			unknown protein		Lus10007687 [exp]	15.7	0.8838
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10013094 [exp]	16.1	0.8674
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024135 [exp]	19.5	0.8949

Compare expression of checked genes

Lus10000515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.