Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29200 633 / 0 APUM1 pumilio 1 (.1) AT2G29140 630 / 0 APUM3 pumilio 3 (.1) AT2G29190 628 / 0 APUM2 pumilio 2 (.1.2) AT3G10360 565 / 0 APUM4 pumilio 4 (.1) AT3G20250 463 / 5e-156 APUM5 pumilio 5 (.1) AT4G25880 428 / 1e-143 APUM6 pumilio 6 (.1.2.3) AT1G22240 174 / 2e-49 APUM8 pumilio 8 (.1) AT1G78160 172 / 7e-48 APUM7 pumilio 7 (.1) AT5G56510 164 / 4e-45 APUM12 pumilio 12 (.1) AT4G08840 149 / 5e-40 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002708 [exp] 773 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10016513 [exp] 633 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10040782 [exp] 622 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 612 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 597 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 594 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 582 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10033353 [exp] 480 / 4e-163 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 480 / 4e-162 AT3G20250 880 / 0.0 pumilio 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201100 [exp] 721 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G058300 [exp] 714 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 638 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 615 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G036500 [exp] 573 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 550 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 491 / 2e-166 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 473 / 2e-159 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 465 / 2e-156 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 194 / 1e-55 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10000516 pacid=23158774 polypeptide=Lus10000516 locus=Lus10000516.g ID=Lus10000516.BGIv1.0 annot-version=v1.0 ATGGGATCTTGGCACTCAGATGCTATTGGCAACTTTAATGAAGGCTTTCCATCTTCTCTACTGGATGAGTTCAAAAGCAACAAGACTAAGTGTTTTGAAC TCTCAGAAATTGCTGGTCATGTTGTTGAGTTCAGCGCCGACCAGTATGGGAGTCGATTCATTCAACAGAAACTTGAAACAGCTACAACAGAAGAAAGAGA CATGGTTTTCAACGAGATTATGCCCCAAGCCCTTTCATTAATGACTGATGTGTTTGGTAATTATGTCATTCAGAAGTTTTTTGAGCATGGATCTGCTCCT CAAATAAGAGAACTGGCTGAGCAGCTAACTGGTCATGTTCTGACCCTCAGCCTTCAAATGTATGGTTGTCGAGTAATCCAGAAGGCTATTGAAGTAGTTG AGCTGGACCAGCAGACCCAAATGGTGAAAGAGCTTGATGGTCATATCATGCGATGTGTGCGTGACCAGAATGGAAATCATGTCATCCAAAAGTGTATTGA ATGTGTACCTGAAGATGCTATACATTTCATTGTTTCTACATTTTATGATCAAGTTGTTACACTATCCACTCATCCCTATGGTTGCCGCGTAATTCAGAGA GTTTTGGAGCACTGTCATGATTCAAAAACCCAGCAATTAATGATGGACGAGATCTTACGTTCAGTTTGCATGTTGGCACAAGATCAGTATGGGAATTATG TTGTACAGCATGTGCTGGAGCATGGTAAGCCAGATGAACGTGAATGCATAATAAAGAAACTGACCGGGCAGATAGTTCAGATGAGTCAGCAGAAGTTTGC TTCCAATGTTATAGAAAAGTGTTTGACATTTGGTACAGCTGCTGAACGCCAGGCGTTGGTTGATGAGATGCTTGGCACAACTGATGAGAATGAGCCTCTT CAGGCAATGATGAAGGATCAGTTTGCAAACTACGTTGTACAGAAAGTGCTGGAAACTTGCGATGACCAACAGCTAGAATTGATCCTCAACCGAATAAAGG TGCACTTAAATGCTCTGAAGAAGTATACTTACGGGAAGCATATAGTGGCACGTGTAGAGAAGCTTGTTGCAGCTGGAGAGAGGCGCATCAGCATCCTTAC GCTGCAACCTGCTGCTGTTGTTTAG
AA sequence Show only first row Show all	>Lus10000516 pacid=23158774 polypeptide=Lus10000516 locus=Lus10000516.g ID=Lus10000516.BGIv1.0 annot-version=v1.0 MGSWHSDAIGNFNEGFPSSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEERDMVFNEIMPQALSLMTDVFGNYVIQKFFEHGSAP QIRELAEQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFYDQVVTLSTHPYGCRVIQR VLEHCHDSKTQQLMMDEILRSVCMLAQDQYGNYVVQHVLEHGKPDERECIIKKLTGQIVQMSQQKFASNVIEKCLTFGTAAERQALVDEMLGTTDENEPL QAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISILTLQPAAVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000516 [exp]	0	1
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	6.3	0.9340
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	7.4	0.9206
AT5G64730			Transducin/WD40 repeat-like su...		Lus10002090 [exp]	7.7	0.9049
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	13.6	0.9297
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	14.0	0.8730
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	15.2	0.9223
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033337 [exp]	17.3	0.9181
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	20.0	0.8991
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10018611 [exp]	20.1	0.8886
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	21.3	0.9234

Compare expression of checked genes

Lus10000516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.