Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22220 112 / 2e-29 hAT transposon superfamily (.1.2) AT4G15020 111 / 7e-29 hAT transposon superfamily (.1.2) AT3G17450 47 / 2e-06 hAT dimerisation domain-containing protein (.1) AT3G48770 46 / 4e-06 DNA binding;ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002709 [exp] 79 / 1e-19 AT4G15020 49 / 5e-08 hAT transposon superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114100 [exp] 54 / 4e-09 AT3G17450 945 / 0.0 hAT dimerisation domain-containing protein (.1) Potri.002G188400 [exp] 53 / 2e-08 AT3G17450 960 / 0.0 hAT dimerisation domain-containing protein (.1) Potri.T045300 [exp] 52 / 4e-08 AT4G27220 279 / 1e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145530 [exp] 49 / 2e-07 AT4G27220 278 / 8e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.T013300 [exp] 49 / 2e-07 AT4G27220 278 / 8e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G002800 [exp] 47 / 1e-06 AT4G27220 317 / 9e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.T012000 [exp] 46 / 3e-06 AT4G27220 314 / 1e-89 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136301 [exp] 45 / 6e-06 AT4G27220 329 / 8e-97 NB-ARC domain-containing disease resistance protein (.1) Potri.018G137900 [exp] 44 / 1e-05 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020500 [exp] 44 / 1e-05 AT4G27220 326 / 2e-95 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF02892 [flax] [poplar] zf-BED BED zinc finger
Representative CDS sequence Show only first row Show all	>Lus10000517 pacid=23158767 polypeptide=Lus10000517 locus=Lus10000517.g ID=Lus10000517.BGIv1.0 annot-version=v1.0 ATGGGTTCGAATATGGAAATCGTTCCAATAACTTCTCAAAAGCACGACCCGGCATGGAAGCACTGCCAGATGTTTAAGAATGGGGACAGGGTTCAGCTTC AGTGTGTGTATTGTACCAAGGTTTTCAAAGGGGGAGGAATTCATAGGATTAAGGAACATCTAGCTGGCCAAAAGGGCAATGCTTCCACTTGCTTGCAAGT TCCTCCTGATGTTAAGACTGCAATGCAGCAGAGTTTGGACGGTGTCGTTGTTAAGAAGAAGAAGAAGCAAAAGATTGAGGAGGAGATCATGGGTGTGAAT AATAACCATGCTGCTAACTCCTTAGATGAGGGTTTCCCTGTTAATGATCAAAGTGGGTTTGATGATGACGAGATATTTAGTAGAGCAAAGGAAGGCATGG AAGAAAAGATTGAAGAGAATGCAGTAGTGTTGCAACATACCATTGAAGGTTCTGCTGATATGTTTCCAATTTGA
AA sequence Show only first row Show all	>Lus10000517 pacid=23158767 polypeptide=Lus10000517 locus=Lus10000517.g ID=Lus10000517.BGIv1.0 annot-version=v1.0 MGSNMEIVPITSQKHDPAWKHCQMFKNGDRVQLQCVYCTKVFKGGGIHRIKEHLAGQKGNASTCLQVPPDVKTAMQQSLDGVVVKKKKKQKIEEEIMGVN NNHAANSLDEGFPVNDQSGFDDDEIFSRAKEGMEEKIEENAVVLQHTIEGSADMFPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15020			hAT transposon superfamily (.1...		Lus10000517 [exp]	0	1
AT2G30600			BTB/POZ domain-containing prot...		Lus10016014 [exp]	21.5	0.6993
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016631 [exp]	41.5	0.6946
AT5G65380			MATE efflux family protein (.1...		Lus10015905 [exp]	69.5	0.6208
AT2G28130			unknown protein		Lus10021421 [exp]	70.0	0.6775
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10026376 [exp]	74.0	0.6774
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018404 [exp]	74.8	0.6700
AT2G31580			tRNAHis guanylyltransferase (....		Lus10041070 [exp]	80.1	0.6734
AT1G19980			cytomatrix protein-related (.1...		Lus10017215 [exp]	80.7	0.6704
AT1G63110			GPI transamidase subunit PIG-U...		Lus10006320 [exp]	86.3	0.6652
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10034116 [exp]	94.4	0.6689

Compare expression of checked genes

Lus10000517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.