Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14465 181 / 3e-55 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G55560 181 / 4e-55 AT-hook AHL15, AGF2 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) AT2G35270 178 / 3e-54 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G17800 176 / 2e-53 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G42940 169 / 7e-51 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G04570 167 / 1e-49 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT2G45430 164 / 1e-48 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 163 / 1e-47 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G22810 162 / 1e-47 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G35390 153 / 2e-44 AT-hook AGF1 AT-hook protein of GA feedback 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002711 [exp] 345 / 3e-119 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10006577 [exp] 188 / 5e-58 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10020763 [exp] 176 / 2e-53 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10042551 [exp] 167 / 5e-50 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10031460 [exp] 158 / 8e-48 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10022010 [exp] 158 / 8e-47 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1) Lus10031458 [exp] 147 / 2e-43 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10009301 [exp] 146 / 2e-41 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10015862 [exp] 145 / 2e-41 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058700 [exp] 224 / 2e-71 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.010G200100 [exp] 221 / 2e-70 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.013G044500 [exp] 199 / 3e-62 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.010G074201 [exp] 196 / 3e-61 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.001G142800 [exp] 185 / 1e-56 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.003G091300 [exp] 181 / 3e-55 AT4G17800 315 / 4e-108 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 176 / 1e-53 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 176 / 2e-53 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 176 / 4e-53 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.002G059400 [exp] 174 / 8e-53 AT2G42940 311 / 2e-107 Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10000519 pacid=23158773 polypeptide=Lus10000519 locus=Lus10000519.g ID=Lus10000519.BGIv1.0 annot-version=v1.0 ATGGCGGATAATCGATGGTGGGCCGGGAATGTAGCTATGCGAGGAGTGGATCCGATCACTTCATCCCCGCAATCTTCCTCGCCAATCCCTCCATCTCTCC ACCACCTCAGAAACCCTGACGAAGAGCTTCAAGACAGCAGCAGGGACAACCAAGATTCCGGTGGAGGTACTGGAGGAGGAGGTGGAACCACCTCCTCTCG GAGGCCAAGAGGCCGACCGGCGGGATCCAAGAACAAGCCCAAACCGCCGATAGTTGTCACGAAGGAAAGCCCTAACTCCCTCCGCAGCCACATCCTAGAG GTCCCTTCCGGATGCGACGTCTCCGAGGGAATCGCCGGATTCGCCCAGCGCCGCCACTGCGGGGTGTCGATCATGAGCGGAAACGGCGTCGTCACTAACG TAACCCTGCGCCAGCCAGCTGCTCCGGGAGGGGTTATATCTCTTCATGGAAGGTTCGAGATCCTTTCGCTGTCCGGTTCGTTCCTGCCGGCTCCTTCTCC ACCCGGGGCGACCGGTTTGACCGTTTACCTAGCGGGCGGACCGGGGCAGGTGGTGGGCGGGAGGGTTGTGGGACCCCTGGTAGCGTCCGGGCCGGTAATG GTGATCGCGGCGACGTTTAGTAACGCCACGTATGAGAGGCTGCCGCTTGATCCGGATCAGGAGGTGGGGCATGGGCCGGGCCCAGGCCCGGAAGTTATGC AATTAGAAGCAGGTAATGATAAGAATAATGGGAATGAGAACAATAATAATGATGGGAGTGGAGGGGAGAATTCAGGAGGCTCGGCTGGTACTAGTGATAA TCATCAGCATGGACATGGAGCAATTGGGTCTCATCATCCTCCGGCAATCTACAATTTGCCGCCGAATGGGCAAATGCCTCATGAAGTCTTCTGGGGAGCT CCTCCGCGGCCGCCATTTTGA
AA sequence Show only first row Show all	>Lus10000519 pacid=23158773 polypeptide=Lus10000519 locus=Lus10000519.g ID=Lus10000519.BGIv1.0 annot-version=v1.0 MADNRWWAGNVAMRGVDPITSSPQSSSPIPPSLHHLRNPDEELQDSSRDNQDSGGGTGGGGGTTSSRRPRGRPAGSKNKPKPPIVVTKESPNSLRSHILE VPSGCDVSEGIAGFAQRRHCGVSIMSGNGVVTNVTLRQPAAPGGVISLHGRFEILSLSGSFLPAPSPPGATGLTVYLAGGPGQVVGGRVVGPLVASGPVM VIAATFSNATYERLPLDPDQEVGHGPGPGPEVMQLEAGNDKNNGNENNNNDGSGGENSGGSAGTSDNHQHGHGAIGSHHPPAIYNLPPNGQMPHEVFWGA PPRPPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	0	1
AT3G21690			MATE efflux family protein (.1...		Lus10001142 [exp]	3.0	0.8610
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002936 [exp]	6.9	0.8423
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	7.7	0.8186
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	12.0	0.8120
AT4G39230			NmrA-like negative transcripti...		Lus10023557 [exp]	12.1	0.8497
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	15.7	0.8228
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	20.0	0.8268
AT1G78895			Reticulon family protein (.1)		Lus10034807 [exp]	21.6	0.8364
AT3G22250			UDP-Glycosyltransferase superf...		Lus10031068 [exp]	26.2	0.7426
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10022239 [exp]	29.2	0.8212

Compare expression of checked genes

Lus10000519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.