Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44920 285 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G12250 65 / 9e-13 Pentapeptide repeat-containing protein (.1.2) AT5G55000 59 / 2e-10 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002712 [exp] 348 / 1e-123 AT2G44920 287 / 3e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10024602 [exp] 60 / 1e-10 AT1G12250 354 / 1e-123 Pentapeptide repeat-containing protein (.1.2) Lus10032239 [exp] 60 / 1e-10 AT1G12250 357 / 9e-125 Pentapeptide repeat-containing protein (.1.2) Lus10020270 [exp] 51 / 2e-07 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10002622 [exp] 49 / 7e-07 AT5G55000 462 / 1e-165 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10007788 [exp] 42 / 9e-05 AT5G53490 301 / 2e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200000 [exp] 309 / 4e-108 AT2G44920 256 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G058800 [exp] 306 / 5e-107 AT2G44920 253 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G112900 [exp] 66 / 1e-12 AT1G12250 363 / 1e-128 Pentapeptide repeat-containing protein (.1.2) Potri.013G062500 [exp] 50 / 3e-07 AT5G55000 413 / 2e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.019G038400 [exp] 49 / 1e-06 AT5G55000 414 / 1e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.012G018100 [exp] 42 / 9e-05 AT5G53490 318 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0505 [flax] [poplar] Pentapeptide PF00805 [flax] [poplar] Pentapeptide Pentapeptide repeats (8 copies)
Representative CDS sequence Show only first row Show all	>Lus10000520 pacid=23158771 polypeptide=Lus10000520 locus=Lus10000520.g ID=Lus10000520.BGIv1.0 annot-version=v1.0 ATGCATCTTCTTCTGAATGTATCGCTCTGTACGGCTAAAACTCCACCAAAACCCTCACTTCCATTCCTTCCAAACCCTCCACAACCCCCACTTTCTCTTT CTTTGCCCCGTTCCCAGGTGTTACGAGACTTGGCTAAAACAGGCTTGCTTGCAATGCTATCCGCCTCTGTCTTCCTCGCTGACCCTGCTCTCGCATACAA GGGAGGAGGTCCGTACGGTTCTGAGGTGACCAGGGGCCAGGATCTGACTGGCAAGGATTTCAGTGGCAAGACTTTGATCAAGCAGGACTTTAAGACGTCA ATTCTAAGGCAAGCCAATTTCAAAGGTGCAAAGTTGCTCGGGGCTAGTTTCTTTGATGCTGATTTGACTGGAGCCGATCTTTCGGATGCAGACCTTAGAG GAGTAGATTTCTCATTGGCCAATGTGACAAAGGTGAACTTGAGCAATGCCAACCTAGAAGGCGCTCTAACCACAGGCAATACTTCATTCAAGGGCTCAAA CATAGCAGGAGCAGATTTCACTGATGTGCCTCTACGGGAGGATCAGCGTGAATACCTTTGCAAAATTGCAGATGGGGTGAACCCAACTACCGGAAATGCG ACCCGTGAGACTTTACTTTGTAACTAA
AA sequence Show only first row Show all	>Lus10000520 pacid=23158771 polypeptide=Lus10000520 locus=Lus10000520.g ID=Lus10000520.BGIv1.0 annot-version=v1.0 MHLLLNVSLCTAKTPPKPSLPFLPNPPQPPLSLSLPRSQVLRDLAKTGLLAMLSASVFLADPALAYKGGGPYGSEVTRGQDLTGKDFSGKTLIKQDFKTS ILRQANFKGAKLLGASFFDADLTGADLSDADLRGVDFSLANVTKVNLSNANLEGALTTGNTSFKGSNIAGADFTDVPLREDQREYLCKIADGVNPTTGNA TRETLLCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10000520 [exp]	0	1
AT4G19100		PAM68	photosynthesis affected mutant...		Lus10012152 [exp]	1.0	0.9639
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10025799 [exp]	5.7	0.9613
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	6.9	0.9432
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	8.0	0.9564
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	8.7	0.9588
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10035389 [exp]	9.6	0.9338
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	10.4	0.9451
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10008131 [exp]	12.0	0.9438
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10035171 [exp]	12.7	0.9370
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10033200 [exp]	14.1	0.9544

Compare expression of checked genes

Lus10000520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.