Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15620 293 / 3e-97 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT5G24850 82 / 4e-17 CRY3 cryptochrome 3 (.1) AT1G04400 64 / 3e-11 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT4G08920 52 / 3e-07 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022095 [exp] 301 / 2e-98 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10033499 [exp] 75 / 4e-15 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10020878 [exp] 73 / 3e-14 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10011822 [exp] 63 / 7e-11 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10021188 [exp] 63 / 9e-11 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10020930 [exp] 50 / 8e-07 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10033446 [exp] 50 / 9e-07 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G060000 [exp] 296 / 5e-97 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.010G071200 [exp] 75 / 7e-15 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.006G277500 [exp] 70 / 3e-13 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.008G166632 [exp] 57 / 2e-09 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.005G164700 [exp] 57 / 7e-09 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.002G096900 [exp] 56 / 1e-08 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10000521 pacid=23182076 polypeptide=Lus10000521 locus=Lus10000521.g ID=Lus10000521.BGIv1.0 annot-version=v1.0 ATGTCCATGGCGTCGTCAGCTTCTTCATCTTCTGTGCGATCGGGTAATTCCCTCGTGTGGTTTCAGAAGGGGCTCCGTGTCCACAACAACCCAGCCCTAG AATACGCTTCCAAAAGTGCTGCTGCTGGGTTTCTATACCCGGTGTTTGTTATTGATCCGCATTACATGGAACCGGACCGCAATGCTTTTTCTCCTGGTTC GGGTCGAGCAGGGTTGAATAGGATTAGGTTTTTGTTGGAGAGCCTCAAAGATCTGGACTTGAGTCTTAGGAAGCTTGGTTCCAGGTTGCTGGTTCTCAAG GGAGAACCTGGAGAGGTTTTGATTAACTGCTTGAACCACAAGTGGGTGGCGACATTCGAAAAGCCTAAGGGTGTTCCATCTGCTTTCTTAAGGCCAGCAA CTACAACTCTCTCACCATACTTGAAATTTGGCTGTCTTTCTTCTAGGTACTTCTACCAGTGCATTCAAGATGTTTATACGACGTTTAACAAAAAACACAC ATCACCACCAGTTTCGCTTCTTGGCCAGTTGCTATGGAGAGATTTCTTTTACACAGTGGCTTTTGGCACTCCAAACTTTGATCAGATGAGAGGGAACAGA ATATGCAAGCAGATACCTTGGAGTGACAATGAAGAATTACTGACAGCTTGGAGGGAAGCTAAAACAGGGTATCCTTGGATTGATGCAATCATGGTCCAGT GGGGTTGGATGCATCATCTAGCGAGGCACTGTATCGCGTGTTTCCTGACTCGTGGCCATCTGTTTGTTCACTGGGAAAAGGGGCGTGACGTTTTCGAAAG GCTTCTGATTGATTCAGACTGGCAATCAACAATGGGAATTGGATGTGGCTCTCTTGTTCTTCATTCTTCTATCACCTATGAACTTTGA
AA sequence Show only first row Show all	>Lus10000521 pacid=23182076 polypeptide=Lus10000521 locus=Lus10000521.g ID=Lus10000521.BGIv1.0 annot-version=v1.0 MSMASSASSSSVRSGNSLVWFQKGLRVHNNPALEYASKSAAAGFLYPVFVIDPHYMEPDRNAFSPGSGRAGLNRIRFLLESLKDLDLSLRKLGSRLLVLK GEPGEVLINCLNHKWVATFEKPKGVPSAFLRPATTTLSPYLKFGCLSSRYFYQCIQDVYTTFNKKHTSPPVSLLGQLLWRDFFYTVAFGTPNFDQMRGNR ICKQIPWSDNEELLTAWREAKTGYPWIDAIMVQWGWMHHLARHCIACFLTRGHLFVHWEKGRDVFERLLIDSDWQSTMGIGCGSLVLHSSITYEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10000521 [exp]	0	1
AT1G31500			DNAse I-like superfamily prote...		Lus10000005 [exp]	8.9	0.6219
AT5G13260			unknown protein		Lus10002574 [exp]	9.8	0.7627
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10001615 [exp]	14.0	0.7055
AT5G13260			unknown protein		Lus10001801 [exp]	20.7	0.7481
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	22.4	0.7206
AT1G64300			Protein kinase family protein ...		Lus10036439 [exp]	23.1	0.6752
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	25.9	0.7230
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	31.1	0.7000
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	44.1	0.6944
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10034687 [exp]	45.6	0.6680

Compare expression of checked genes

Lus10000521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.