Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18540 86 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008576 [exp] 95 / 2e-23 AT4G18540 551 / 0.0 unknown protein Lus10013937 [exp] 94 / 5e-23 AT4G18540 549 / 0.0 unknown protein Lus10036092 [exp] 86 / 4e-22 AT4G18540 120 / 1e-32 unknown protein Lus10036093 [exp] 87 / 2e-20 AT4G18540 621 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064300 [exp] 90 / 9e-22 AT4G18540 547 / 0.0 unknown protein Potri.004G054500 [exp] 85 / 4e-20 AT4G18540 593 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000522 pacid=23164428 polypeptide=Lus10000522 locus=Lus10000522.g ID=Lus10000522.BGIv1.0 annot-version=v1.0 ATGAAGAATGAAGTAAAGGAAGCAGCAGCTGCTGCTCGAGAGGATGTTACTCAGGGAGCTGCTGTCAATGATGATGGTAGCCTGTCACCGTCGCGTACTA AGCGATGGTCGATCTCACTTCACACGTCGCAAGGTTCTGGAAGAAGAGGACAAGGATCGATGGGGGTTACCTTCGGGAACTTCTCCAATGAAGATGAAGA TGAAACTGACGATACCCTTCATGTCAGTAGGAATCCATCGCCGATCCAGTTCGCTTTGATGGGACGTTCCAACGTGTCGGAAATGAGCGTTGATGCCGGC AAGAAATGGGGAGCTGAAGTCGTTGTTGTTCTGAGCAAACCTGAAAGGAGTCGAGACATTGTTAATGCGTGTAAATGTGCTGGAATACCGGCTTTCGGTC CGATTTGGGATTCTTAA
AA sequence Show only first row Show all	>Lus10000522 pacid=23164428 polypeptide=Lus10000522 locus=Lus10000522.g ID=Lus10000522.BGIv1.0 annot-version=v1.0 MKNEVKEAAAAAREDVTQGAAVNDDGSLSPSRTKRWSISLHTSQGSGRRGQGSMGVTFGNFSNEDEDETDDTLHVSRNPSPIQFALMGRSNVSEMSVDAG KKWGAEVVVVLSKPERSRDIVNACKCAGIPAFGPIWDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18540			unknown protein		Lus10000522 [exp]	0	1

Compare expression of checked genes

Lus10000522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.