Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28580 358 / 6e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28590 358 / 9e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28600 349 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 348 / 3e-118 SGNH hydrolase-type esterase superfamily protein (.1.2) AT2G27360 347 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G31550 336 / 3e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28640 333 / 4e-112 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28610 330 / 2e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28650 330 / 6e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 329 / 8e-111 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013938 [exp] 637 / 0 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10024085 [exp] 367 / 1e-125 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 333 / 2e-112 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 292 / 1e-94 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015476 [exp] 292 / 3e-94 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10019947 [exp] 234 / 1e-74 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 220 / 8e-65 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034763 [exp] 203 / 9e-62 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012644 [exp] 196 / 7e-59 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054300 [exp] 381 / 4e-131 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 320 / 2e-107 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024300 [exp] 232 / 5e-73 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G064100 [exp] 224 / 5e-72 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.005G024900 [exp] 225 / 2e-70 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 225 / 3e-70 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 225 / 3e-70 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 224 / 5e-70 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G015200 [exp] 206 / 5e-63 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G463900 [exp] 201 / 4e-61 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10000523 pacid=23164427 polypeptide=Lus10000523 locus=Lus10000523.g ID=Lus10000523.BGIv1.0 annot-version=v1.0 ATGGTTCTTCCCGCCGCCGTCAAGACCCTCCTCCTCTTCCTCTCCATCTCATCCGCCGCCGCCGCCAGTCCATGCTTCACTTCCCTCTTCAGCTTCGGTG ATTCAATCACCGACACGGGTAACCAAATGCTCCTCGGCACTCCGGGAAACCTCCCCCACTGCTGCTTCCCCCCTTACGGCAAAACCTCCTTCGGCGGGCC AACCGGCCGATGCTCCGACGGCCGCCTCATCGTCGATTTCATTGCTGAGGGATTGGGGCTGCCGTTGCTGACGTCATATCCCGGTGTGGTGAAGAGCAAT AACTTCCGGATGGGAGCGAACTTGGCCGAAGGAGGAGCGACCGCGCTTGACATCCGGTTCCTTATCGAGAGAGGGATTCATAACACACACACGAATACAT CTTTGCAAGATGAGCTCGATTGGTTCAAGGTGCTGTTGACAACCATCTGTTCATCTCCCTCTGAGTGCAAGGAGTACCTCAGTAAGTCTCTAATCTTGAT GGGAGAGGTCGGAGGGATCGATTACAACAGAGCGTTCTTCCAAGACGTTCCAGTTCCGACCATTCAGGAGCTCGTACCTTATGTTGTGGCCGAAATCGGA AAGGCCCTCGAGGAGCTGATTGAATTAGGGGCAGTGACGATTTTGGTCCCCGGAAATCTGCCGATCGGATGCTGCCCGGGTTACCTCGCGAAATTCTGGA GTCCTAACAAGGAAGATTATGATCCTCAGACTGGGTGTCTCGTTTGGTACAACGATTTCGCTAAGCATCACAACGACCTTCTCCGCAATGAAATTGTTCG AGTTAAGGAGATTCATCCTCATACAACCATCATGTACGTCGACTACTATGCATCCGCTGATCGGATCCATCAACACCCTGCAAAATTTGGTTTCACCGGC TCGGCGTTGGTAGCGTGTTGTGGAGGAGGAGGTCCGTACAACTACAACGAAACTTTGGTTTGTGGGAACCCAGGATCCGTGGCATGTGCAGAGCCGTCGA CTTATATCAGTTGGGACGATCATCATTATACGGAAGCGGCTTATAGAATAATGGCTAAGGATGTGTTGGACGGTTTGTTTACAGTCCCTCGATTCAATGC TTCATGTCTGGTGCGTCGGACGAGCGATGTCGATGGACATTCTACGTACTAG
AA sequence Show only first row Show all	>Lus10000523 pacid=23164427 polypeptide=Lus10000523 locus=Lus10000523.g ID=Lus10000523.BGIv1.0 annot-version=v1.0 MVLPAAVKTLLLFLSISSAAAASPCFTSLFSFGDSITDTGNQMLLGTPGNLPHCCFPPYGKTSFGGPTGRCSDGRLIVDFIAEGLGLPLLTSYPGVVKSN NFRMGANLAEGGATALDIRFLIERGIHNTHTNTSLQDELDWFKVLLTTICSSPSECKEYLSKSLILMGEVGGIDYNRAFFQDVPVPTIQELVPYVVAEIG KALEELIELGAVTILVPGNLPIGCCPGYLAKFWSPNKEDYDPQTGCLVWYNDFAKHHNDLLRNEIVRVKEIHPHTTIMYVDYYASADRIHQHPAKFGFTG SALVACCGGGGPYNYNETLVCGNPGSVACAEPSTYISWDDHHYTEAAYRIMAKDVLDGLFTVPRFNASCLVRRTSDVDGHSTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Lus10000523 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	4.0	0.9264
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016105 [exp]	8.5	0.8966
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	9.3	0.9219
AT1G71910			unknown protein		Lus10016934 [exp]	13.3	0.8803
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	15.0	0.8955
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	21.2	0.8988
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10017444 [exp]	25.1	0.8931
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	25.6	0.9070
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	26.3	0.8775
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	27.5	0.8600

Compare expression of checked genes

Lus10000523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.