Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45920 337 / 4e-118 SGNH hydrolase-type esterase superfamily protein (.1) AT5G62930 241 / 3e-80 SGNH hydrolase-type esterase superfamily protein (.1) AT3G11210 157 / 1e-47 SGNH hydrolase-type esterase superfamily protein (.1) AT2G38180 155 / 4e-46 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013941 [exp] 343 / 2e-121 AT5G45920 257 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027675 [exp] 239 / 1e-79 AT5G62930 414 / 2e-148 SGNH hydrolase-type esterase superfamily protein (.1) Lus10004815 [exp] 163 / 9e-50 AT3G11210 323 / 3e-112 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028290 [exp] 157 / 3e-47 AT3G11210 402 / 2e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10040197 [exp] 154 / 7e-46 AT3G11210 402 / 5e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10035506 [exp] 132 / 2e-36 AT3G11210 244 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013940 [exp] 114 / 5e-33 AT5G45920 80 / 3e-20 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039938 [exp] 103 / 5e-28 AT5G62930 180 / 1e-58 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027790 [exp] 103 / 8e-26 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G053800 [exp] 358 / 7e-127 AT5G45920 329 / 3e-115 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G063800 [exp] 355 / 1e-125 AT5G45920 357 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G081900 [exp] 244 / 2e-81 AT5G62930 403 / 3e-144 SGNH hydrolase-type esterase superfamily protein (.1) Potri.006G100300 [exp] 160 / 1e-48 AT3G11210 327 / 8e-114 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G068000 [exp] 160 / 1e-48 AT3G11210 419 / 5e-150 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116100 [exp] 157 / 3e-47 AT3G11210 337 / 9e-118 SGNH hydrolase-type esterase superfamily protein (.1) Potri.010G189300 [exp] 154 / 2e-46 AT3G11210 414 / 4e-148 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115800 [exp] 149 / 3e-44 AT3G11210 307 / 4e-106 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116000 [exp] 147 / 8e-44 AT3G11210 306 / 1e-105 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10000525 pacid=23164429 polypeptide=Lus10000525 locus=Lus10000525.g ID=Lus10000525.BGIv1.0 annot-version=v1.0 ATGAGGCCAAACATTTATCTGTTCGGCGACTCCATTACCGAGATGTCCTTCGCCGACGGCGGCTGGGGCGCCTCCCTCGCCAACCACTTCTGCCGCACGG TGGATGTGGTGGTGAGAGGGTATAGCGGGTACAACTCGAGGTGGGCGCTGATGACGGCGGAGAAGGTGTTTCCGGCACCGACGACGTCGACGTTGGCGGT GACTGTGTTCTTCGGGGCGAACGACGCTTGTCTTCCGGATAGGTACGGTGGATTCCAGCACGTGCCTCTTGATGAGTACAAGCGTAACCTACGGTCCATT GTCTCCTTCATTAAGGATCGTTGGCCAAATGCAGTGATTCTACTCATAACTCCTCCTCCAATCGACGAAGAGGCTCGCCTCAAGAATCCGTACATGGATA ACCCATCGGGTCTACCCGAGCGGACCAACCAAGTGGCCGGCGAATACACCAAGGGATGCCTTGATGTTGCCAATGAATGTGGCTGCCCTGTTGTAGACCT ATGGACCAAAATGCAACAGTTTCCAAATTGGCAAACTTCTTGCCTCAGTGATGGGCTGCACTTGAGCCAGTTAGGGAACAAGATAGTGTTCGATGAAGTG GTGAAGAAGCTGGAGGAGCAAGGACTCAGCCCTGAAACGCTGTCGTATGACCTGCCGGCTTTCTCGGACATTGATTTCAAGAATCCATTGAAGAGTTTTC GAGATTAA
AA sequence Show only first row Show all	>Lus10000525 pacid=23164429 polypeptide=Lus10000525 locus=Lus10000525.g ID=Lus10000525.BGIv1.0 annot-version=v1.0 MRPNIYLFGDSITEMSFADGGWGASLANHFCRTVDVVVRGYSGYNSRWALMTAEKVFPAPTTSTLAVTVFFGANDACLPDRYGGFQHVPLDEYKRNLRSI VSFIKDRWPNAVILLITPPPIDEEARLKNPYMDNPSGLPERTNQVAGEYTKGCLDVANECGCPVVDLWTKMQQFPNWQTSCLSDGLHLSQLGNKIVFDEV VKKLEEQGLSPETLSYDLPAFSDIDFKNPLKSFRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45920			SGNH hydrolase-type esterase s...		Lus10000525 [exp]	0	1
AT1G08845			Ribosomal L18p/L5e family prot...		Lus10001727 [exp]	1.7	0.8902
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	2.2	0.8882
					Lus10003137 [exp]	2.4	0.8968
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	3.5	0.8978
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10034286 [exp]	6.2	0.8538
AT3G02710			ARM repeat superfamily protein...		Lus10026721 [exp]	7.0	0.8784
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	7.3	0.8748
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	10.6	0.8758
					Lus10001241 [exp]	11.3	0.8887
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	14.5	0.8736

Compare expression of checked genes

Lus10000525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.