Plant FIBer expression Database

Lus10000526 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73020 785 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009732
[exp]
1279 / 0 AT1G73020 815 / 0.0 unknown protein
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0416 Anoctamin-like PF04547 Anoctamin Calcium-activated chloride channel
Representative CDS sequence
>Lus10000526 pacid=23180209 polypeptide=Lus10000526 locus=Lus10000526.g ID=Lus10000526.BGIv1.0 annot-version=v1.0
ATGAATGGGGATGAAGGAGAAGAACACGCTGGTTTTGAGATAGGCTTGGTGGTTCGAAAGAGGATTTTCAAACAACAAGATGATACTGTTGATTGCATTG
AGGTTCTTCTTAATGAGCTCAGACATGTTGGATTCACTGTGGAGACGCTGGCTGCATCTTTGGAGAGATTGGGGCAGGCTGCAGCTGATTTGCAGTTGAG
GAAACCTACTTATATTGGGATCGATCTCCCATTTCAGTGGGAGGATGTGAATGCATTTGTGAGGCAGCCAGATGGCACATTGTTCAGCTGGTGTGAACGT
TTCCGATGCTACCAACACATGTTGTATGGAATTGTAAATAGAACCCAGTCAGGCATTAGTCTAAAATTGGATGGAACGGTACTCGTCTGGAACATCAGGG
AACCTTTAGTGCAGAAGTTGGAATCTGAGGGCATTGTCAAACATGTTTTCCCTCTTCATGATGAAGCTAAGAGGAAGAAGCTCCTCCGAAGTTGGGTACT
GAACAAGAGAAACTTCACTAATCAAGACATTGACGACATGTATTCATATTTTGGACTAAAGATTGCTATTTATTTTGCGTTTCTACGGATGTATGCGCGC
TGGATAGTGTTTCCTGCCCTATTGGCTATGATAGTGCAGTTGGTTAATTTTGGCTCATTGCAGTTCTTAGTGCTCCCTGTGTTCTTCACAAGCACAACAT
TATGGGCTGTATTGTTTTTCCAGTTCTGGAAACGAAAGAACTATTCCCTTATATCCAGGTGGCAGATAAATTGCTCAGTTACTGCTGGGCAAGGATATAA
GTTCTTGGGAATGGAATGTACTTCCATAAAGACTCGACTAGAGCTGCTAAAAGCAATGGGGGATAGGAACAGAGAGAAAGCAGTTTATCAGAGATATGAA
TGGTTTGGGCACCTTGTTCGATTTCGGAACAATGCTCTTATTATTCTAGGCATTGTTTGCCTTCAGTTGCCCTTTGAATTAGCCTATGCTCACCTCTATG
AGGTTCTTAAGTCGGATGTCCCAAAGTTCACATTAACCGCTGGATACATTATTCTCATTCAATACTTCACAAAGCTCGGGGCCAAATTATCAGTGAGACT
GATAAAATATGAAAACAATGAAAACTCACAGTTTCAGGCTGACAGCTTGGTGTACAAAGTATTCGGGTTGTACTTCATGCAATCATACATTGGAGTTTTC
TATCATGCACTTTTGCACCGTAACTTCCTGACCCTTCGCCAGCTCTTGATTCAGCGTCTCATAATCTTCCAGGTATTGGAAAATATGTTGGAACATTCAC
TACCATATGTCAAATACAGCATCAAGAAGTACAGAGCAGTAAGAAACAAGAAACACAGGAGCAGTGCATCTGACAATAAGAAGATTCTCTTCCAATCCAA
GGTGGAGAAAGAGTACCTAAAACCTGCTTATAATGCAAGTATAGGGGATGAATTTGAGGATGGCCTTTTCGATGACTATCTGCAGCTGGCATTGCAGTTT
GGAATGATCATGATGTTTGCTTGTGCTTTTCCTCTTGCATTTGTCTTCGCTGCCGTGAACAGCTTCACAGAGGTTAGAACAGATGCACTAAAGCTGCTTG
CCATGTTCCGAAGGCCTGTTCCTCGTGTTGCTGCCACGATCGGAGCTTGGATCAACATATACCAGTTCCTAATAGTCATGTCGATCTGCACAAACTCGGT
CCTTCTAGTTTGCATGTACGATCAGGAGAGAAAATGGCAAATAGAACCAGGACTTGCTGGAATTCTCATCATGGAACATGTCCTCCTTCTCATCAAGTTT
GGATTTTCGCAATTTGTTCCCGAGGAACCTGCTTGGGTAAGAGCAAGACGGGTGTGGAACGCAGAGCAAGTGCAGGATGCATGTGCTAAACAGCTTCTCA
AGAGCTTTCCAAGCCGGGAAAGAATACCTGAAGAAGAAAACAAGTGCGAGTGA
AA sequence
>Lus10000526 pacid=23180209 polypeptide=Lus10000526 locus=Lus10000526.g ID=Lus10000526.BGIv1.0 annot-version=v1.0
MNGDEGEEHAGFEIGLVVRKRIFKQQDDTVDCIEVLLNELRHVGFTVETLAASLERLGQAAADLQLRKPTYIGIDLPFQWEDVNAFVRQPDGTLFSWCER
FRCYQHMLYGIVNRTQSGISLKLDGTVLVWNIREPLVQKLESEGIVKHVFPLHDEAKRKKLLRSWVLNKRNFTNQDIDDMYSYFGLKIAIYFAFLRMYAR
WIVFPALLAMIVQLVNFGSLQFLVLPVFFTSTTLWAVLFFQFWKRKNYSLISRWQINCSVTAGQGYKFLGMECTSIKTRLELLKAMGDRNREKAVYQRYE
WFGHLVRFRNNALIILGIVCLQLPFELAYAHLYEVLKSDVPKFTLTAGYIILIQYFTKLGAKLSVRLIKYENNENSQFQADSLVYKVFGLYFMQSYIGVF
YHALLHRNFLTLRQLLIQRLIIFQVLENMLEHSLPYVKYSIKKYRAVRNKKHRSSASDNKKILFQSKVEKEYLKPAYNASIGDEFEDGLFDDYLQLALQF
GMIMMFACAFPLAFVFAAVNSFTEVRTDALKLLAMFRRPVPRVAATIGAWINIYQFLIVMSICTNSVLLVCMYDQERKWQIEPGLAGILIMEHVLLLIKF
GFSQFVPEEPAWVRARRVWNAEQVQDACAKQLLKSFPSRERIPEEENKCE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73020 unknown protein Lus10000526
[exp]
0 1
AT1G01860 PFC1 PALEFACE 1, Ribosomal RNA aden... Lus10015847
[exp]
2.0 0.8996
AT2G13440 glucose-inhibited division fam... Lus10014348
[exp]
2.2 0.9139
AT4G31210 DNA topoisomerase, type IA, co... Lus10026990
[exp]
7.9 0.8905
AT2G13440 glucose-inhibited division fam... Lus10026055
[exp]
19.6 0.8697
AT4G30920 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytos... Lus10035823
[exp]
20.7 0.8505
AT2G30320 Pseudouridine synthase family ... Lus10026423
[exp]
20.8 0.8390
AT3G56330 N2,N2-dimethylguanosine tRNA m... Lus10012884
[exp]
22.2 0.8335
AT5G19840 2-oxoglutarate (2OG) and Fe(II... Lus10014697
[exp]
25.8 0.8434
AT5G23690 Polynucleotide adenylyltransfe... Lus10036013
[exp]
26.5 0.8503
AT2G04270 RNEE/G RNAse E/G-like (.1.2.3.4.5) Lus10036417
[exp]
27.0 0.8585

Lus10000526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.