Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019607 [exp] 312 / 2e-109 ND / Lus10012077 [exp] 293 / 6e-101 AT5G27260 50 / 5e-07 unknown protein Lus10016300 [exp] 187 / 6e-61 ND / Lus10014160 [exp] 171 / 4e-53 ND 47 / 6e-06 Lus10006010 [exp] 163 / 9e-52 ND / Lus10020974 [exp] 165 / 4e-51 ND / Lus10037335 [exp] 134 / 2e-38 AT5G27260 69 / 7e-13 unknown protein Lus10032348 [exp] 122 / 6e-34 AT5G27260 52 / 2e-07 unknown protein Lus10035759 [exp] 116 / 2e-31 AT5G27260 74 / 6e-15 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000529 pacid=23142499 polypeptide=Lus10000529 locus=Lus10000529.g ID=Lus10000529.BGIv1.0 annot-version=v1.0 ATGCTGGTTAAGTGCATACTTACGTTGGCAGAGCTTAACAAAGTGCACGCGAAAGGAAAGTTTGCGCCTGGAGCGCACAAGGACATAGAGCGAATGATGG AGGAGGAAATATCGGGATGCAGTGTAAAGGCCGACCCTAACATCATTTCTCGGTGCAAGCTTTTGAAGTCCAAATTTTTGGCAGTGCAGGAGTTAAAAGG GCTGAGCGGTGCTGGCTGGTGCAATGTGAACAAGATGGTGATGCTTGATGAGACCGTGTATGCGGATTACGTAAAGCCGAATCACGATGGTGATGAACCG GGATTGGGTGGCCAGTCACAAGCCGACGGTGAAGGCTTCATTAACCTTGATGATGAAGTTCCCCCAGCAACACCAACCGACAAGGGAAATCAGTCAGATG CGACTAGTGGACCAAAGAGGCTTCGTCGATCCTCAAAGGCAGCTACGACCGGTGACGACGATGAGTTAACACCTTTGTTGAAGGAGACAGTCTGCTCACT AAGAGAATTGGTTGGCGAATCGGCTGCACATAAAAGCCAATGA
AA sequence Show only first row Show all	>Lus10000529 pacid=23142499 polypeptide=Lus10000529 locus=Lus10000529.g ID=Lus10000529.BGIv1.0 annot-version=v1.0 MLVKCILTLAELNKVHAKGKFAPGAHKDIERMMEEEISGCSVKADPNIISRCKLLKSKFLAVQELKGLSGAGWCNVNKMVMLDETVYADYVKPNHDGDEP GLGGQSQADGEGFINLDDEVPPATPTDKGNQSDATSGPKRLRRSSKAATTGDDDELTPLLKETVCSLRELVGESAAHKSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000529 [exp]	0	1
					Lus10005514 [exp]	1.0	1.0000
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	1.4	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	1.7	1.0000
					Lus10008001 [exp]	2.0	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	2.2	1.0000
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037633 [exp]	2.4	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024903 [exp]	4.6	0.9876
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Lus10025150 [exp]	4.8	0.9532
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10025240 [exp]	5.2	0.8794
					Lus10004507 [exp]	7.2	0.8818

Compare expression of checked genes

Lus10000529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.