Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22450 72 / 1e-14 unknown protein AT4G20920 51 / 2e-07 double-stranded RNA-binding domain (DsRBD)-containing protein (.1) AT4G20910 49 / 1e-06 CRM2, HEN1 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004878 [exp] 122 / 5e-32 AT5G22450 916 / 0.0 unknown protein Lus10020607 [exp] 120 / 2e-31 AT5G22450 916 / 0.0 unknown protein Lus10038546 [exp] 99 / 2e-20 AT4G20910 806 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Lus10023257 [exp] 98 / 2e-20 AT4G20910 818 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Lus10008393 [exp] 56 / 2e-09 AT3G52280 139 / 3e-39 general transcription factor group E6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203500 [exp] 80 / 2e-17 AT5G22450 958 / 0.0 unknown protein Potri.010G238400 [exp] 68 / 4e-13 AT5G22450 513 / 8e-161 unknown protein Potri.001G465500 [exp] 67 / 4e-13 AT4G20910 857 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Potri.011G163600 [exp] 67 / 6e-13 AT4G20910 776 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Potri.008G020600 [exp] 67 / 6e-13 AT5G22450 543 / 2e-172 unknown protein Potri.009G164400 [exp] 64 / 5e-12 AT5G22450 952 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000530 pacid=23142501 polypeptide=Lus10000530 locus=Lus10000530.g ID=Lus10000530.BGIv1.0 annot-version=v1.0 ATGTTTGGCTCGGGGAGCGGTTTGAGTCGGGGCAATGCGACGTCACACTTGGATATGCCACCTTTGACAGAGTGCTTACTTTTGGAGCCGATCACATTAG GTGGCCACAAATTCACTCGTTCTGAAAAAATAAGGCGAGCTTTCGGTTTCGGAAGTGCTGCTGAGGACAATTCGTTTGGACTCGCTCATCCAAAACATTC TCCAAAAGGAGCGTTGTGCAGAGATGATGATCTATGTGGTTCAGTGCCCTATTCAGTATTTGCTGTCTTTGATACAAAGTTGAGCAATTTATGTAAATCA CTAGACCCCAATGTGGAATTGAATCCTTTCCTGGCGCTTCCAATCATTAGAATTGCTGCAGCAAGATTACCCTCTGTTGTGGTTTCGGAGAAAAGGGCAG TTAGTAAAGCTTCTTCAGAGACAAGATTATATCACGCTGCTCCTGAATCACTTCTGGTCGAGCTGTCGCCAGATCGCGTACCTGTAAAAGATGTCCACCT AGAAGGATCATATAATGCAAGAGCTAGCTACTTTTGTGGCCAAGCTAAGTCATACATGGGGGTGCCATCATGGCTTACATTGGGTACACGTGGAGGTCCA GAGACCTTTTTCATGAGAATTTAA
AA sequence Show only first row Show all	>Lus10000530 pacid=23142501 polypeptide=Lus10000530 locus=Lus10000530.g ID=Lus10000530.BGIv1.0 annot-version=v1.0 MFGSGSGLSRGNATSHLDMPPLTECLLLEPITLGGHKFTRSEKIRRAFGFGSAAEDNSFGLAHPKHSPKGALCRDDDLCGSVPYSVFAVFDTKLSNLCKS LDPNVELNPFLALPIIRIAAARLPSVVVSEKRAVSKASSETRLYHAAPESLLVELSPDRVPVKDVHLEGSYNARASYFCGQAKSYMGVPSWLTLGTRGGP ETFFMRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22450			unknown protein		Lus10000530 [exp]	0	1
					Lus10003536 [exp]	1.0	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	1.4	1.0000
					Lus10011078 [exp]	1.7	1.0000
					Lus10011425 [exp]	2.0	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	2.2	1.0000
					Lus10023589 [exp]	2.4	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	2.6	1.0000
					Lus10027689 [exp]	2.8	1.0000
					Lus10012998 [exp]	3.0	1.0000
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015750 [exp]	3.2	1.0000

Compare expression of checked genes

Lus10000530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.