Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54150 328 / 9e-111 E3 Ubiquitin ligase family protein (.1) AT1G59560 76 / 3e-15 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT1G63900 62 / 1e-10 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT4G24204 59 / 5e-10 RING/U-box superfamily protein (.1.2.3) AT2G38195 51 / 7e-07 RING/U-box superfamily protein (.1.2) AT5G19080 50 / 8e-07 RING/U-box superfamily protein (.1) AT2G38220 49 / 4e-06 RING/U-box superfamily protein (.1) AT3G06140 49 / 4e-06 RING/U-box superfamily protein (.1) AT5G03200 48 / 5e-06 RING/U-box superfamily protein (.1) AT5G23110 49 / 6e-06 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027994 [exp] 68 / 1e-12 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10008163 [exp] 64 / 3e-11 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10010392 [exp] 54 / 2e-08 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10034030 [exp] 50 / 1e-06 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10041246 [exp] 50 / 3e-06 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10004419 [exp] 49 / 3e-06 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10041245 [exp] 49 / 4e-06 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10023182 [exp] 47 / 9e-06 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10015080 [exp] 47 / 1e-05 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065500 [exp] 441 / 6e-155 AT1G54150 341 / 3e-115 E3 Ubiquitin ligase family protein (.1) Potri.001G168700 [exp] 395 / 7e-137 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) Potri.014G138000 [exp] 67 / 3e-12 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.014G020900 [exp] 58 / 5e-09 AT5G01450 116 / 9e-29 RING/U-box superfamily protein (.1) Potri.007G050500 [exp] 51 / 1e-07 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.006G128700 [exp] 50 / 8e-07 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.016G116300 [exp] 50 / 2e-06 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 49 / 3e-06 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 49 / 4e-06 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 49 / 5e-06 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12483 [flax] [poplar] GIDE E3 Ubiquitin ligase
Representative CDS sequence Show only first row Show all	>Lus10000533 pacid=23140359 polypeptide=Lus10000533 locus=Lus10000533.g ID=Lus10000533.BGIv1.0 annot-version=v1.0 ATGTCTTCACAAGACCAAGCTTTGCTCTCTATAGTTTCCCAATTGGCTTTATCCTTCGACGGTGCCGTCCTCGGCGTAGCCCTAGCCTACGCCGCCGTCC GTTCCTTTCTCAAGTTCGCCGCTCGCTCCAAAGCCCTAAAAAAAGTTCGCAACGCTCCCGTTCTCACCGTCTCCGATCTCCGTTCACTTCTCGACGCCCC TTCCCCGCCGTCTCATCAAGACCACAACCTAGACCTTGATCTTGGAGCTAGTACTATTAGTAGTCAGCAGCTTGTGATTCTCCGCGGACAAGTCGAAGCC AAGTCGGTTGTCGATGGAATTTGGAAGAGCAGCCTCAGGCCTACTCTGTTGGTTTCTCATGAGTCTGGTGAGAAGGCTGTGGTCATACAGAGGACTCAAA CTGTTCCTTTTGTTCTTCTCGAGACTGGTAGGTGGCCACAATCAGAATATGTTTCTGTTAACATGGATGGTTCACGGCATCCGTTACCCCTCACCACAGT TTATCATCAGTTGCAACCCATTGATGCTTCTCCCTACACATTTCTCCAGGCACTGTTTGGTCACGAATACCCAGTTGGTCTGCTTGATGAGGAGAAAATA CTGCCAGTTGGGAAGGAGATTACTGCTATTGGAATGTGCGGTTCTGGAAACGGGACTCCTGAGATAACGTCTTGCAAAGATCTTCCTTATTTTCTTACAG AGATGAGCAAGGATGAAATGGTGTTGCAACTAGCATTCACCACAAAAGTATTAATGTGGAGTGGGATTGTCCTTGGTTCAGTGTCAGTTGGGATCCTTGG TTATGCATTGAGGAAGAACTGGAATAGATGGAAAGAGCATAGACAAAGGAGAGAGTCTGAGCAATCAACTAGTGAGATGTCTCAGGTTGATGAATCGGAT GATGATGTTGGGGGGGTGGCAGATGGACAGCTGTGTGTAATATGTTTAGCGAGGAGGAGGCGTTCTGCGTTTATACCGTGCGGACACCTAGTTTGCTGCC AGTACTGCGCAATATCAGTTGAACGCGATGCGTCACCAAAGTGCCCTCTCTGTCGCCAGTTGATCAGGAACTCCATAAGGATATTTGATACTTGA
AA sequence Show only first row Show all	>Lus10000533 pacid=23140359 polypeptide=Lus10000533 locus=Lus10000533.g ID=Lus10000533.BGIv1.0 annot-version=v1.0 MSSQDQALLSIVSQLALSFDGAVLGVALAYAAVRSFLKFAARSKALKKVRNAPVLTVSDLRSLLDAPSPPSHQDHNLDLDLGASTISSQQLVILRGQVEA KSVVDGIWKSSLRPTLLVSHESGEKAVVIQRTQTVPFVLLETGRWPQSEYVSVNMDGSRHPLPLTTVYHQLQPIDASPYTFLQALFGHEYPVGLLDEEKI LPVGKEITAIGMCGSGNGTPEITSCKDLPYFLTEMSKDEMVLQLAFTTKVLMWSGIVLGSVSVGILGYALRKNWNRWKEHRQRRESEQSTSEMSQVDESD DDVGGVADGQLCVICLARRRRSAFIPCGHLVCCQYCAISVERDASPKCPLCRQLIRNSIRIFDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54150			E3 Ubiquitin ligase family pro...		Lus10000533 [exp]	0	1
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	5.7	0.8625
AT1G47410			unknown protein		Lus10006481 [exp]	6.2	0.8736
					Lus10033310 [exp]	10.0	0.8617
AT5G56460			Protein kinase superfamily pro...		Lus10013406 [exp]	11.3	0.8472
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	12.7	0.8504
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10017878 [exp]	15.7	0.8500
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	16.7	0.8622
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	17.2	0.8558
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	19.8	0.8199
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10000196 [exp]	20.5	0.8248

Compare expression of checked genes

Lus10000533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.