Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16480 188 / 1e-57 ATINT4 inositol transporter 4 (.1) AT2G35740 185 / 3e-56 ATINT3 nositol transporter 3 (.1) AT1G30220 162 / 9e-48 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 115 / 2e-30 ATINT1 inositol transporter 1 (.1) AT2G18480 81 / 2e-18 AtPLT3 Major facilitator superfamily protein (.1) AT4G36670 79 / 1e-17 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G20780 76 / 2e-16 AtPLT4 Major facilitator superfamily protein (.1) AT3G05150 75 / 2e-16 Major facilitator superfamily protein (.1) AT2G48020 74 / 8e-16 Major facilitator superfamily protein (.1.2) AT1G08930 72 / 3e-15 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039050 [exp] 240 / 3e-77 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 234 / 4e-75 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 230 / 7e-74 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10038808 [exp] 213 / 9e-67 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 200 / 6e-62 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 196 / 3e-60 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10028118 [exp] 167 / 1e-49 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 167 / 1e-49 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10027026 [exp] 100 / 2e-25 AT2G43330 769 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015300 [exp] 224 / 2e-71 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 209 / 3e-65 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 208 / 5e-65 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.004G133420 [exp] 117 / 2e-33 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.017G032400 [exp] 109 / 1e-30 AT2G43330 272 / 8e-90 inositol transporter 1 (.1) Potri.017G032200 [exp] 113 / 7e-30 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 104 / 1e-26 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.013G135200 [exp] 81 / 3e-18 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.007G027900 [exp] 75 / 3e-16 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.004G152300 [exp] 72 / 2e-15 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10000534 pacid=23160075 polypeptide=Lus10000534 locus=Lus10000534.g ID=Lus10000534.BGIv1.0 annot-version=v1.0 ATGCTGCTAGCCAGTACAATCCAGGAGCATTGTTTGGTGTCCGACAAGACAGTAAAAGGAGTCTGCCTATCCGAAAAGCGATTATGGTACTCGGAAGGCT GTCCGAGCAGGATTGGGTTTCTGGCGGTGATTCTTCTTGCTCTGGACATCATTTCCTACTCTCCCGGAATGGGGTCAGCTCCGTGGATCGTCAACTCCGA GATCTATCCGCTCCGGTACAGAGGGATCGGAGGAGGAATCGCTGCCGTGGCGAACTGGACGTCGAATCTGGTTGTCAGCTTGACGTTTCTGACGATGACC GAGACCCTGATGGTGGCAGGAGCGTTCCTGATGTTTGCCGGGATTTCGTTGCTGGGTTTGATTGCTATATTCTTTTTGATTCCTGGGACCAAAGGGTTGC AGTTTGAGGAGGTGGAGAAGATGCTGAAGGATGGGTATAAGCCTGGGCTCTTCAGGAAATCTGAAGCTTGA
AA sequence Show only first row Show all	>Lus10000534 pacid=23160075 polypeptide=Lus10000534 locus=Lus10000534.g ID=Lus10000534.BGIv1.0 annot-version=v1.0 MLLASTIQEHCLVSDKTVKGVCLSEKRLWYSEGCPSRIGFLAVILLALDIISYSPGMGSAPWIVNSEIYPLRYRGIGGGIAAVANWTSNLVVSLTFLTMT ETLMVAGAFLMFAGISLLGLIAIFFLIPGTKGLQFEEVEKMLKDGYKPGLFRKSEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10000534 [exp]	0	1
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	6.8	0.9029
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10029022 [exp]	8.1	0.7606
AT3G14880			unknown protein		Lus10039196 [exp]	9.2	0.8995
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	12.4	0.8919
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	14.3	0.8919
AT1G04670			unknown protein		Lus10004041 [exp]	16.0	0.8919
					Lus10040397 [exp]	17.5	0.8919
AT4G23350			Protein of Unknown Function (D...		Lus10042273 [exp]	18.6	0.8821
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	18.9	0.8919
					Lus10006918 [exp]	20.2	0.8919

Compare expression of checked genes

Lus10000534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.