Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11880 521 / 0 transferases, transferring hexosyl groups (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G216900 [exp] 597 / 0 AT1G11880 544 / 0.0 transferases, transferring hexosyl groups (.1) Potri.001G008600 [exp] 65 / 2e-12 AT1G11880 66 / 1e-13 transferases, transferring hexosyl groups (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF04188 [flax] [poplar] Mannosyl_trans2 Mannosyltransferase (PIG-V)
Representative CDS sequence Show only first row Show all	>Lus10000535 pacid=23160071 polypeptide=Lus10000535 locus=Lus10000535.g ID=Lus10000535.BGIv1.0 annot-version=v1.0 ATGAGAGGCGTAACGGCATCGATTCACGTCTACCCTCACCAAAAATTAGTCGTCAAATGTGCAGTAGCATCGAGGATTCTCCTCTTGGTTCTGATCTTCC TGTGGCGCAGTCTTGTTTCTTCATATGACACCTCATCTCCTCTTAACCCTGATTGTCTATCAACAAAATCTGATCATCAAGGGAATGTTTTACTTCCCGG TATCGGCTCTGCGATTGAGGATAGTGTTGTGTGGGATAGCGTCTATTTCGTTCGAATTGCACAATGCGGCTATGAGTATGAGCAGTCTTATGCCTTCTTC CCGCTCCTTCCTGTATCAATGTCCCTCTTATCTCGTACAGTTTTGGCACCATTGGTCCCTCTTTTTGGATTCAGAGCTGTCCTAGCACTGGCAGGATATG CTGTTAATAATGCTGCTTTTGTTTTAGCATCAGTTTATCTTTACAGGCTATCAGTTATGATTTTGGGCAACCCTGAAGTGGCACTCCAAGCTTCAGTGTT GTTTTGTTTCAACCCAGCATCTATATTTTATTCATCAATATACACCGAGAGTTTGTACTCTCTATCATCACTTGGAGGATTGCACCATTTGATATCTGGT GCCAGTACTGTTTCTGTTATTTGGTTTGCCCTCTCTGCTTGTGCAAGATCGAATGGAGTGCTTAATGCTGGTTATTTCTGTTTTCAGACCATGCATCAAG TTTATGATGCCGTGTTCCTGAAAAAGCGCGCTTCACTTGCAGTTCATGTTCTTATCCTTGGAGTGCTACGTTGTATTTGTACGTTCGCACCCTTTATTGC CTTTCAAGCTTACGGCTATCGTAATCTATGTCTCGACCGCACCTTGGACGAAACAAGGCCATGGTGCAACGCGAAAATACCATTGCTCTACAACTACATT CAAGGCCGCTATTGGGGAGTAGGGTTCTTGAGATATTTCCAGTTCAAACAATTGCCAAACTTTCTCCTTGCATCTCCAATATTATCTCTAGCAGTATGCT CCATTTTCCACTATGTGAGGTCTCAATCTCAGATCTTTCTCTCGTTGGGACTTCAAGTGCCTAGGCGTTCGATTGCATCTGTAGTTAACTCTCCAATAAC TAACGAGGAATCCAGCGAAATAATCCAAGAGAAGAGTGGTGTTAGCCATAGGAGGCGTTCCGCTGTAGCAGATCATCAGCACAATTCCCCTGCGGAAAAC TACGATGCATCACTAGAAAAGAGATCGCATCTATCGACCTACATCGTTCCATGTACCCTGCACTTAGCATTCATGGCAGCCACAGCATTCTTCGTCATGC ATGTTCAAGTCGCAACACGATTCTTGTCGTCCAGCCCTCCATTGTACTGGTTCTTGTCGTCGAGGATGCTGACTCCCGGAAAGAAATTCGGCCATTTGGT TTGGGGATATTGCATTGCTTACATCCTTCTTGGCAGTTTGCTCTTCTCAAACTTCTACCCTTTTACCTGA
AA sequence Show only first row Show all	>Lus10000535 pacid=23160071 polypeptide=Lus10000535 locus=Lus10000535.g ID=Lus10000535.BGIv1.0 annot-version=v1.0 MRGVTASIHVYPHQKLVVKCAVASRILLLVLIFLWRSLVSSYDTSSPLNPDCLSTKSDHQGNVLLPGIGSAIEDSVVWDSVYFVRIAQCGYEYEQSYAFF PLLPVSMSLLSRTVLAPLVPLFGFRAVLALAGYAVNNAAFVLASVYLYRLSVMILGNPEVALQASVLFCFNPASIFYSSIYTESLYSLSSLGGLHHLISG ASTVSVIWFALSACARSNGVLNAGYFCFQTMHQVYDAVFLKKRASLAVHVLILGVLRCICTFAPFIAFQAYGYRNLCLDRTLDETRPWCNAKIPLLYNYI QGRYWGVGFLRYFQFKQLPNFLLASPILSLAVCSIFHYVRSQSQIFLSLGLQVPRRSIASVVNSPITNEESSEIIQEKSGVSHRRRSAVADHQHNSPAEN YDASLEKRSHLSTYIVPCTLHLAFMAATAFFVMHVQVATRFLSSSPPLYWFLSSRMLTPGKKFGHLVWGYCIAYILLGSLLFSNFYPFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11880			transferases, transferring hex...		Lus10000535 [exp]	0	1
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	7.1	0.8553
AT2G20410			RNA-binding ASCH domain protei...		Lus10014656 [exp]	7.5	0.8431
					Lus10031873 [exp]	12.2	0.8441
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10033644 [exp]	15.0	0.8108
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10037839 [exp]	16.5	0.8053
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	16.7	0.8412
					Lus10004778 [exp]	20.3	0.8339
					Lus10033601 [exp]	20.7	0.8318
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10014901 [exp]	21.0	0.8174
AT1G06060			LisH and RanBPM domains contai...		Lus10005633 [exp]	25.4	0.7964

Compare expression of checked genes

Lus10000535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.