Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47520 363 / 3e-129 AtRABA5a RAB GTPase homolog A5A (.1) AT2G31680 276 / 7e-95 AtRABA5d RAB GTPase homolog A5D (.1) AT1G05810 274 / 2e-93 ARA, Ara-1, AtRab11D, AtRABA5e ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) AT2G43130 272 / 3e-93 ARA4, AtRab11F, AtRABA5c, Ara-4 ARABIDOPSIS RAB GTPASE HOMOLOG A5C, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G07410 266 / 7e-91 AtRABA5b RAB GTPase homolog A5B (.1) AT5G65270 253 / 1e-85 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 245 / 1e-82 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G07410 244 / 3e-82 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT5G59150 239 / 2e-80 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT3G46830 239 / 3e-80 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017558 [exp] 401 / 4e-144 AT5G47520 367 / 1e-130 RAB GTPase homolog A5A (.1) Lus10038807 [exp] 377 / 1e-134 AT5G47520 376 / 2e-134 RAB GTPase homolog A5A (.1) Lus10026731 [exp] 278 / 1e-95 AT2G31680 381 / 2e-136 RAB GTPase homolog A5D (.1) Lus10025516 [exp] 278 / 1e-95 AT2G31680 381 / 2e-136 RAB GTPase homolog A5D (.1) Lus10039051 [exp] 258 / 8e-89 AT5G47520 259 / 2e-89 RAB GTPase homolog A5A (.1) Lus10000637 [exp] 257 / 4e-87 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10023153 [exp] 256 / 8e-87 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10038226 [exp] 253 / 1e-85 AT1G05810 333 / 3e-117 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) Lus10025876 [exp] 252 / 4e-85 AT1G05810 331 / 1e-116 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010300 [exp] 367 / 1e-130 AT5G47520 395 / 7e-142 RAB GTPase homolog A5A (.1) Potri.006G015400 [exp] 363 / 3e-129 AT5G47520 398 / 5e-143 RAB GTPase homolog A5A (.1) Potri.002G231800 [exp] 288 / 2e-99 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.014G150300 [exp] 284 / 7e-98 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.002G249500 [exp] 267 / 3e-91 AT1G05810 333 / 8e-117 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) Potri.007G096000 [exp] 248 / 1e-83 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 247 / 2e-83 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.010G197200 [exp] 243 / 5e-82 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.016G000400 [exp] 243 / 1e-81 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.006G000300 [exp] 242 / 1e-81 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10000536 pacid=23160073 polypeptide=Lus10000536 locus=Lus10000536.g ID=Lus10000536.BGIv1.0 annot-version=v1.0 ATGGCATTCTACTCTGAAGAGGACAATGCAGAGGATTACCTGTTCAAGATTGTACTCATTGGTGATTCTGCTGTCGGGAAGTCGAATCTGCTGGCTAGGT ATGCGAGGGATGAGTTCTACTCCAACTCGAAATCCACGATAGGGGTCGAGTTCCAAACATCAAAGATGGATATCAATGGGAAAGAAGTGAAAGCGCAGAT TTGGGATACGGCTGGTCAGGAGCGGTTTAGAGCTGTAACGTCTGCTTATTATAGAGGTGCAGTTGGTGCCCTTGTTGTCTATGATATCAGTCGACGCCAG ACTTTTGACTCCATTGGCAGATGGCTCAATGAACTTCAGACTCACTCAGACATGAACGTGGTGACGATCCTGGTGGGGAACAAGTCGGATCTGAAGGACG CGAGGGAGGTGACGACAGCAGAAGGGAAATCATTGGCGGAGGCACAAGGATTGTTCTTCATGGAAACATCTGCGCTGGACTCGTCGAACGTGACGTCTGC TTTCGAGACGGTGGTGAAGGAGATCTACAACATACTGAGTAGAAAGGTGATATCCCAAGAGCTGAAGAAGCAGGATGCGCCGAGTGGGAAGACGGTGGTT TTGAAGGGTGACGATGAGAAGGAAGGCGGCGCCGGTGGTGATGATGAGGGAGCAAAACAGGGCGGCGGATGTTGTTAA
AA sequence Show only first row Show all	>Lus10000536 pacid=23160073 polypeptide=Lus10000536 locus=Lus10000536.g ID=Lus10000536.BGIv1.0 annot-version=v1.0 MAFYSEEDNAEDYLFKIVLIGDSAVGKSNLLARYARDEFYSNSKSTIGVEFQTSKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRQ TFDSIGRWLNELQTHSDMNVVTILVGNKSDLKDAREVTTAEGKSLAEAQGLFFMETSALDSSNVTSAFETVVKEIYNILSRKVISQELKKQDAPSGKTVV LKGDDEKEGGAGGDDEGAKQGGGCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10000536 [exp]	0	1
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	4.2	0.8721
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	4.2	0.8905
AT3G08670			unknown protein		Lus10025209 [exp]	5.5	0.8721
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	8.7	0.8010
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Lus10002036 [exp]	8.9	0.8381
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	9.2	0.8579
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	10.6	0.8648
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023912 [exp]	12.6	0.7884
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003978 [exp]	15.3	0.8014
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	15.7	0.8498

Compare expression of checked genes

Lus10000536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.