Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 403 / 2e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 368 / 2e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 347 / 5e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 327 / 4e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 234 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 229 / 7e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 175 / 9e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 173 / 3e-49 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 160 / 2e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 155 / 5e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017555 [exp] 811 / 0 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 595 / 0 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 580 / 0 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 576 / 0 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 451 / 6e-155 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 444 / 2e-152 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 366 / 2e-121 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 330 / 7e-110 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 248 / 2e-77 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010200 [exp] 566 / 0 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 557 / 0 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 491 / 8e-171 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 490 / 9e-171 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 483 / 5e-168 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 459 / 3e-158 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G170400 [exp] 249 / 6e-77 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 248 / 9e-77 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 244 / 2e-75 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 240 / 4e-74 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10000537 pacid=23160076 polypeptide=Lus10000537 locus=Lus10000537.g ID=Lus10000537.BGIv1.0 annot-version=v1.0 ATGGAGCTTGGAAAGCTTTTCATTGGTGGGATTTCATGGGACACGAATGAAGACCGTCTTAGGGAGTATTTCCAGGCGTTTGGGGATGTTGTGGAAGCTG TGATCATGAAGGATCGGTCCACTGGTCGAGCTCGTGGCTTTGGATTCGTTGTGTTTTCTGACCCTGCTGTTGCTGAGAGGGTTGTTATGCAGAAGCACCT CATAGATGGTAGAAATGTTGAGGCGAAGAAAGCAGTTCCGAGGGAAGATCAGAGCAGTCTGACTAGAAGCAACAACAGCAGCATTCAAGGGTCGCCTGGT CCAACCCGCACCAAGAAAATATTCGTAGGAGGTTTAGCATCCACAGTCACAGAGAGTGACTTCAAGAAGTACTTTGATCAGTTTGGAACGATAACTGATG TTGTGGTTATGTACGATCACAATACTCAAAGGCCAAGAGGTTTCGGATTCATTACCTTTGATACCGAGGAAGCTGTTGATAAAGTGTTGTACAGAACATT TCATGAACTGAGCGGAAAAATGGTGGAGGTCAAGCGCGCTGTTCCAAAGGACTTGTCATCTGCCGGGACGACCAGGAACCCGTTAGCTGGATATAATTAT GGCATGAATAGAATCAATAGTTTATTTAATGGTTATCCTCAGGCACACAATCCGAATTCTGCTGTAGGTTCGGGGCTGAGAATGGATGGAAGATTCAGTC CAGTGACTGCAAATCGCGGCAGCTTTTCTCCTTTCAATACTGGCTACGGATCAGGTTTAGGTTTTGAGCAGGGTATGAGTCCGAGTTATGGTGGCAATTC AAATCTCGCCTCTAACATGGGGTTTGGACGGCTGAGTCCTTACAGCGGGAACTCAAGCAGGTATGGCAGCCCCATTGGGTATGGAGCAGGAAATGGAGGA AACAATTCTGTCTTAAGTTCTGTTCCACGTACATTGTGGAGCAATGACACCATGCAAAACAATTCAAACTCTAACGGTCAGAATGGGTTTTTGAGTACCG GAGGCTGGAACTCTGGACTCGGCTCCTCCTTTGGTAGTTCTGGAGCTCTATGGGATAACTCCACTAATATGGGGCAAGGAGCTGGTGCTGGCTCTGCATC ATATAACAACGGCAGTGGAGAGTTTAGTATTGGTCTTGGAGGAGCAGGATATGGAAGAACTAGTGGGACAAGTTTCGCGCCGGTACCATCTCGTGCTGCT CCAAACGGTGGAGGCTATGACAGGGCTTATGCTGACATTTACGAAAATGGTGGTTCGCTCTATGGAGATTCCTCTTGGCAATCTTCCACATCTGGGCTGT TCGATTTCGGCCTGGGAAATTCAGCTTCCGATGTCATTACCAAGAACACTGCAGCTTATGGTGGTGGTTATGGCATTGCTGATACACAGCCAGATAGAGG CAAGTTTTTGCCTTTCACACTCTCCTACTCCATTTCTGATTCTCTGTACCTTAAAGTTCTCATCTTTTGCTGGTTTTTGTTTCAGGAATTGCTGCTTAGG AGCAAAAAACAAGGGTGTACTTACTACTATAGGTGA
AA sequence Show only first row Show all	>Lus10000537 pacid=23160076 polypeptide=Lus10000537 locus=Lus10000537.g ID=Lus10000537.BGIv1.0 annot-version=v1.0 MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMKDRSTGRARGFGFVVFSDPAVAERVVMQKHLIDGRNVEAKKAVPREDQSSLTRSNNSSIQGSPG PTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDTEEAVDKVLYRTFHELSGKMVEVKRAVPKDLSSAGTTRNPLAGYNY GMNRINSLFNGYPQAHNPNSAVGSGLRMDGRFSPVTANRGSFSPFNTGYGSGLGFEQGMSPSYGGNSNLASNMGFGRLSPYSGNSSRYGSPIGYGAGNGG NNSVLSSVPRTLWSNDTMQNNSNSNGQNGFLSTGGWNSGLGSSFGSSGALWDNSTNMGQGAGAGSASYNNGSGEFSIGLGGAGYGRTSGTSFAPVPSRAA PNGGGYDRAYADIYENGGSLYGDSSWQSSTSGLFDFGLGNSASDVITKNTAAYGGGYGIADTQPDRGKFLPFTLSYSISDSLYLKVLIFCWFLFQELLLR SKKQGCTYYYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	0	1
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	1.0	0.8650
AT4G19670			RING/U-box superfamily protein...		Lus10038341 [exp]	3.5	0.8591
AT1G24560			unknown protein		Lus10038257 [exp]	3.9	0.8535
AT3G25585		AAPT2, ATAAPT2	aminoalcoholphosphotransferase...		Lus10034410 [exp]	5.9	0.8158
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	5.9	0.8394
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	7.2	0.8461
AT4G30240			Syntaxin/t-SNARE family protei...		Lus10017038 [exp]	9.2	0.7781
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	9.5	0.8113
AT2G46520			cellular apoptosis susceptibil...		Lus10026635 [exp]	13.9	0.7764
AT1G05940		CAT9	cationic amino acid transporte...		Lus10042898 [exp]	13.9	0.8197

Compare expression of checked genes

Lus10000537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.