Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G016100 [exp] 67 / 1e-13 AT4G16460 / unknown protein Potri.016G009800 [exp] 60 / 4e-11 AT4G16460 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000538 pacid=23160077 polypeptide=Lus10000538 locus=Lus10000538.g ID=Lus10000538.BGIv1.0 annot-version=v1.0 ATGGAGAACATATCACAAAGAGCAATGCTGAAGCATTTGCAGAAGGAGCAAGAGAGGGAAAGGAGGAGAATAAGGGACAGGCAAAGGAGACAGTCAATGA CTGTGGAAGAGAGGGAAAGGCATCTAGCTAGGCGGAGGAGGAACTACCAACTGCGTAGGCAAAGAGCTGAGAATGCTAGACTGGATCTTCAACTCAATCA ATCCTCCACTTTAGCTACTCGTGGTGAAGTAGGAGGTTCGAGCAACGAACAGCACCATCATCATCAGCCGCAGCAGAAGCAGCTGGCTGTTGTTCCTGAA GCTAATGTGCAGTTCAGTGGCTTGGCAATCAATGGCATTGTTGATCAGAGAAGACAAGATACCCTAAAAGCTGGACATGCAAATTGTGTAGGGTTGGAAG TTCCAGCGGATGAACTGGCGAAACTGCCGAAACAGCCAAGACTAAAGCATATAAAACAGCTTGCAAGATCTCTAGCGAGCCGTGGAAGCACTGAACAGCA TGATCACAGAATTGCCGTTGATGTCCTAATGAAGGCGAATCCGACATTCGCTTGTAATTACATATGCACTGAGAATCTTAACCAAATTTGTACTGCCTAG
AA sequence Show only first row Show all	>Lus10000538 pacid=23160077 polypeptide=Lus10000538 locus=Lus10000538.g ID=Lus10000538.BGIv1.0 annot-version=v1.0 MENISQRAMLKHLQKEQERERRRIRDRQRRQSMTVEERERHLARRRRNYQLRRQRAENARLDLQLNQSSTLATRGEVGGSSNEQHHHHQPQQKQLAVVPE ANVQFSGLAINGIVDQRRQDTLKAGHANCVGLEVPADELAKLPKQPRLKHIKQLARSLASRGSTEQHDHRIAVDVLMKANPTFACNYICTENLNQICTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000538 [exp]	0	1
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022318 [exp]	2.0	0.8540
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	3.0	0.8769
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	6.7	0.8289
AT5G49810		MMT	methionine S-methyltransferase...		Lus10038132 [exp]	8.2	0.8080
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	10.0	0.8057
					Lus10024086 [exp]	10.6	0.8001
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10013394 [exp]	12.6	0.7780
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	13.7	0.8125
AT3G61610			Galactose mutarotase-like supe...		Lus10000254 [exp]	14.8	0.7768
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10018248 [exp]	15.0	0.8264

Compare expression of checked genes

Lus10000538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.