Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 486 / 9e-173 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 466 / 5e-165 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 384 / 2e-132 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 339 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 325 / 7e-111 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 310 / 2e-104 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 310 / 9e-104 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 281 / 3e-93 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 275 / 2e-89 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022307 [exp] 739 / 0 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 477 / 3e-169 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 478 / 1e-161 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014890 [exp] 397 / 6e-140 AT3G01690 220 / 1e-70 alpha/beta-Hydrolases superfamily protein (.1) Lus10035148 [exp] 390 / 1e-134 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 385 / 8e-133 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 336 / 9e-114 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 333 / 7e-113 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10036842 [exp] 315 / 4e-105 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G340000 [exp] 610 / 0 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 524 / 0 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 501 / 7e-179 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 392 / 1e-135 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 390 / 6e-135 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 387 / 2e-133 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 374 / 2e-128 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G097300 [exp] 348 / 6e-119 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.017G117633 [exp] 347 / 3e-118 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G111400 [exp] 302 / 1e-101 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02230 [flax] [poplar] Abhydrolase_2 Phospholipase/Carboxylesterase
Representative CDS sequence Show only first row Show all	>Lus10000544 pacid=23161690 polypeptide=Lus10000544 locus=Lus10000544.g ID=Lus10000544.BGIv1.0 annot-version=v1.0 ATGGGAGGGGTGACTTCATCCATGGCATCCAAATTTGCCTTATTTCCCCCCAACCCACCATCATACAAGCTTGTCAAAGATGAGATGACTGGTTTGCTTC TGCTCAGCAATTTCCCTCACAGAGAGAATGTGGAAATCTTGAAGCTTCCCACCAGGAAAGGTACTGAGATTGTGGGAATGTACATAAGGCACCCCATGGC TACCTGCACTCTGCTTTACTCCCATGGCAACGCCGCCGATCTGGGTCAGATGTATGAGCTCTTCATTGAGCTCAGCATCCACTTGCGCGTCAATCTCATG GGTCTCACTTTAATGCTTCATCGTCTCATCAAAAGGCAGAATTGGGGAGCTGAGTTTATGCCAAGTGAACAGCACACATATGCAGACATAGAAGCAGCAT ACAAGTGTCTGGAAGAAAGCTATGGGGCCAAGCAACAAGAGATCATCCTATATGGCCAATCTGTAGGCAGCGGCCCTACTCTGGATCTTGCTGCTCGACT GCCTTATTTACGTGCTGTTGTTCTGCACAGTCCCATACTCTCAGGGTTGAGGAATATCGACAAGATTCAACTAGTTGATTCTCCTGTTCTTGTGATTCAT GGAACTGCAGACGAAGTTGTGGATTGGTCTCATGGGAAGCAACTATGGGAACTCTGCAAACAGAAGTATGAACCACTTTGGGTCAAAGGAGGGAGCCACT GTGATCTAGAGCACCATCCAGAGTACATCAGGCATCTCAAGAAGTTCATATCAACCGTCGAGAAATCTCCTTCTCAAAGGTTCATCAGTTCGAGGAGGAG CACAGACCAGTTCGAGCAGCCACGGAAGAGTACAGATGTCTACGAGACTTCTTCGAGGAAAAGCACTGACCGGAGAGAGAAACCGAGACACAGCACAGAC AGGGCCGAGAAGTTGAAGAAGAACCAATCATCGAACTATGCAGAGAAGTTGGAGAAGCTTAAGAGCCAGGCCAGTGCTGCTGAGAAACTGGAGAAGCTGA GGATCTCATTTGATCAAATGGAGAGGTCTAGGAGGAGTGTTGACTGCCATGAGAAATCCAGGAAAAGCGTTGACCACCAACTGGAACGTGCAAGGAAAAG TGTTGACCGGTTGGACAGAATACGGACTGGTTGA
AA sequence Show only first row Show all	>Lus10000544 pacid=23161690 polypeptide=Lus10000544 locus=Lus10000544.g ID=Lus10000544.BGIv1.0 annot-version=v1.0 MGGVTSSMASKFALFPPNPPSYKLVKDEMTGLLLLSNFPHRENVEILKLPTRKGTEIVGMYIRHPMATCTLLYSHGNAADLGQMYELFIELSIHLRVNLM GLTLMLHRLIKRQNWGAEFMPSEQHTYADIEAAYKCLEESYGAKQQEIILYGQSVGSGPTLDLAARLPYLRAVVLHSPILSGLRNIDKIQLVDSPVLVIH GTADEVVDWSHGKQLWELCKQKYEPLWVKGGSHCDLEHHPEYIRHLKKFISTVEKSPSQRFISSRRSTDQFEQPRKSTDVYETSSRKSTDRREKPRHSTD RAEKLKKNQSSNYAEKLEKLKSQASAAEKLEKLRISFDQMERSRRSVDCHEKSRKSVDHQLERARKSVDRLDRIRTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10000544 [exp]	0	1
AT3G51580			unknown protein		Lus10025140 [exp]	3.6	0.8057
AT4G16695			unknown protein		Lus10007491 [exp]	10.5	0.7647
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	14.6	0.7899
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018281 [exp]	16.5	0.7080
AT5G58000			Reticulon family protein (.1)		Lus10036611 [exp]	16.6	0.7446
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	19.5	0.7784
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10035507 [exp]	21.1	0.6904
AT5G51670			Protein of unknown function (D...		Lus10031691 [exp]	30.0	0.7504
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	32.8	0.7322
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	48.7	0.7253

Compare expression of checked genes

Lus10000544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.