Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01680 677 / 0 SEOR1, SEOb Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein AT3G01670 409 / 1e-132 SEOa sieve element occlusion a, unknown protein AT1G67790 150 / 1e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022305 [exp] 1283 / 0 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 1036 / 0 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 1033 / 0 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022306 [exp] 1017 / 0 AT3G01680 735 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10021828 [exp] 752 / 0 AT3G01680 592 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10034567 [exp] 751 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000547 [exp] 736 / 0 AT3G01680 481 / 2e-163 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022304 [exp] 730 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000551 [exp] 664 / 0 AT3G01680 539 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G340600 [exp] 1051 / 0 AT3G01680 746 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340400 [exp] 1046 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340500 [exp] 1043 / 0 AT3G01680 730 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340200 [exp] 1034 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340300 [exp] 1032 / 0 AT3G01680 718 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.017G071000 [exp] 1028 / 0 AT3G01680 693 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050300 [exp] 741 / 0 AT3G01680 577 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050501 [exp] 736 / 0 AT3G01680 575 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.008G183200 [exp] 728 / 0 AT3G01680 576 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050701 [exp] 719 / 0 AT3G01680 534 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11594 [flax] [poplar] Med28 Mediator complex subunit 28
Representative CDS sequence Show only first row Show all	>Lus10000548 pacid=23161691 polypeptide=Lus10000548 locus=Lus10000548.g ID=Lus10000548.BGIv1.0 annot-version=v1.0 ATGCAGTTGATCAAGAATGACCGCGGTGGGATGCTATCGATGTCCGATGATAATGTGATGATGAAGCAAGTCCAGGCAACTCATGCTCCTGATGGCCGAG AAGTTGATGTTGGACCACTTCTTAACCTTGTTGAAGACATCCTCAGTCGTGCCACTCTCCAAGTTGACACTCCATTGCTGGCTAGCAAATCACATGCAGA ACTGGAGGACAAGAACCACCAGATCAACTATGTCACCATGCTTGATGCACTGTCCTATACCATTGACAGAATCTCTTGTGAGATAGCCTACAAGGCACTT GAGGGAGGAGATGCACATGGGACAACCATGACGATATGCGAAACACTTACAAACTATCAATGGGATGCTAAGTTGGTGCTGACCTTGGCAGCTTTTGCAT TGCACTACGGAGAGTTCTGGCTCCTTGCACAGATTTACTCTTCTAACCAACTAGCAAAGTCCATGGCTATCCTTAAGCAGCTGCCCTCTATCATGGAACA TTCCGGCCCATTGAAGCCTCGTTTCGACACCCTTAACAAACTCATGAAGGCCATATTGGAGGTGACTAGGTGTGTGGTTCACTTCAAGGAGCTTCCACCT ATGTACATTTCACATGACATCCCAGCTTTGTCCACGGCCATGACCCACATCCCGACTGCTGTCTACTGGACCATCCGAGGCATTGTGGCTTGCGCGAATC AGATCACTCTTCTAACCACCATGGGCCAACAGTATGCACTATCAACCACAGAGTCATGGGAACTTTCGACATTGGAGCACAAACTTGCCAACATATGCGA GCATCTGAGGATGCAATTAGCAACATGTCAACAGCATATAGATGAGAAGCGAAGCGTTGAGGAATACAAAATGCTAGTGGATCTGTTTGAAATGATTCAC ATTGACAACATGAAGGTGTTGAAGGCTCTAATCTACCCCAAGGATGATATCCAACCACTTGTTGATGGCTCTACCAAGAGAAGGGTGAACATTGATGTGC TTAGACGGAAGAATGTGCTCCTACTGATCTCAGACCTCAACATTTCGAACGACGAGCTTTCAATTCTTGAACAGATTTACAATGAGTCCAGGCTCCATGC CACAAGGATGGACAACCAGTATGAGGTTGTATGGATTCCATTGGTTGACCCTTCAATTAAGTGGAATGACCAGATCCAGAACAAGTTCGAAAGTATACAG TCTACGATGCCATGGTACTCGGTGTATCACCCTTCGTTGATCCACAAGGCGGTCATTAACTTTGTTAGGGAGAGTTGGCATTTCAGGAACAAGCCTATCC TTGTGGTACTTGACCCGCAAGGCAAGGTAGTTAGCCCAAATGCCATTCATATGATGTGGATTTGGGGCAGCAATGCTTTCCCTTTCACAAGCAGGAGGGA GGAAGATCTCTGGAGCACTGAAGCATGGAAGCTTGAACTTCTAGTCAACGGAATCGATCCTATGATTCTCAACTGGATTAAGGAAGAGAAGTACATCTTC ATCTATGGAGGGGATGATGTTGAATGGGTGAGGAAGTTCACAAACTCAGCACAAGCGGTTGCAACAGCAACGCGGATTCCATTGGAGATGGTCTACGTTG GGAAGAGCAGCAAGAGAGAGCAGATCAGGAGAGTGATTGCAACAATCACAGTGGAAAAGCTGAGTTACTTCTGGCAAGACCTTACCATGATATGGTTCTT TTGGACAAGGCTGGAGAGCATGCTGTTCTCCAAGATTCAACTAGGAAAGGTCGATGATCACGATCCGATGATGCAGGAAATCAAGAAGCTCCTTAGCTAT GACAAAGAAGGTGGATGGGCTATCCTCAGCAAGGGATCTAACATCATCTCCAATGGACATGGAAACACTGTTCTGACAACATTGGTTGAGTATGACTTCC ACTCCTTTCCTATGCTGCCATGA
AA sequence Show only first row Show all	>Lus10000548 pacid=23161691 polypeptide=Lus10000548 locus=Lus10000548.g ID=Lus10000548.BGIv1.0 annot-version=v1.0 MQLIKNDRGGMLSMSDDNVMMKQVQATHAPDGREVDVGPLLNLVEDILSRATLQVDTPLLASKSHAELEDKNHQINYVTMLDALSYTIDRISCEIAYKAL EGGDAHGTTMTICETLTNYQWDAKLVLTLAAFALHYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHSGPLKPRFDTLNKLMKAILEVTRCVVHFKELPP MYISHDIPALSTAMTHIPTAVYWTIRGIVACANQITLLTTMGQQYALSTTESWELSTLEHKLANICEHLRMQLATCQQHIDEKRSVEEYKMLVDLFEMIH IDNMKVLKALIYPKDDIQPLVDGSTKRRVNIDVLRRKNVLLLISDLNISNDELSILEQIYNESRLHATRMDNQYEVVWIPLVDPSIKWNDQIQNKFESIQ STMPWYSVYHPSLIHKAVINFVRESWHFRNKPILVVLDPQGKVVSPNAIHMMWIWGSNAFPFTSRREEDLWSTEAWKLELLVNGIDPMILNWIKEEKYIF IYGGDDVEWVRKFTNSAQAVATATRIPLEMVYVGKSSKREQIRRVIATITVEKLSYFWQDLTMIWFFWTRLESMLFSKIQLGKVDDHDPMMQEIKKLLSY DKEGGWAILSKGSNIISNGHGNTVLTTLVEYDFHSFPMLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	1.0	0.9773
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	3.5	0.9547
AT1G67790			unknown protein		Lus10034566 [exp]	4.2	0.9421
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	4.5	0.9366
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	4.9	0.9420
AT5G06850			C2 calcium/lipid-binding plant...		Lus10037480 [exp]	5.1	0.8953
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	7.5	0.9221
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Lus10036321 [exp]	8.0	0.8928
AT5G36930			Disease resistance protein (TI...		Lus10007813 [exp]	8.1	0.9085
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10012927 [exp]	8.7	0.8747

Compare expression of checked genes

Lus10000548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.