Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46200 241 / 4e-76 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022202 [exp] 249 / 1e-78 AT2G46200 221 / 2e-68 unknown protein Lus10021211 [exp] 228 / 2e-71 AT2G46200 196 / 1e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G091400 [exp] 359 / 8e-122 AT2G46200 306 / 3e-101 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000549 pacid=23161696 polypeptide=Lus10000549 locus=Lus10000549.g ID=Lus10000549.BGIv1.0 annot-version=v1.0 ATGAATCCGGTTCCTTTTCGATTACCTCCTCCAGGCCAACAACCTCCTCCTTGGATGCCGATGTTATCGCCCAATTCACCACAGTCCAGTGGATTTTGGG AGAATAGGAATGTTCATGAGCGGCGGAGAGAGCTACAAGAGACTTTGGTGCTTGCTCAGGAAATGCAGAAAGAGTTGGAAATGCTGGCAAAGTTGAAGCA TATTCAAGAATCCGGGGAAGACAGGGATATGGTTTCCGACGATCCTTTTTCATCTATGCTCTCTAAGTGTTTAGGTAGCAGAAAAATTGACCTAGCGAAA CAGGAACACCTCTCTACCAGCGCAGCCAATGCTTTAATGTTGAAGTTGAGAACTCAGCTGGAGCCATTGCAGTACGCCATGGATGATGCAACTCCTTGGG AGGAGAAGGCTGCAGCCATTAGACTCTCGGAGAAATTGCTCAAGTCCAAGAGAAATAAACAATGGAGGAAGAGAAAACGAAAACGCGATGCAGAAATCCA CGCTAAGGAGCATGAGCGGTTTGTGCAAGCTGATCGCGAAGCTGAGGAATGGAGGGCTAGGGCGATTGCTAAGGAAGCTGCACAGCTCAAGGTGGAAAGT ATGAACAGAATTGCAAAGCTCAAGGCAAAAGAAGAGAGAAAGAAGCTTGAATCCGAGCTTGAGCTCGTCTTGATGGTAGAGAAGTTGCAAGAACTGCGTT CCCTAAGGATCCAGAAATTAAAGAAACAAGGCCATTTCCTGCCTGAGGAGGATGATAAGTTTCTGGAGAAGGTTCAAGCTGCAGTTGAGGAAGAGGAGCG CCTGGCCCAGGCTGCTGCCGAGACTAATGCTGCCAAGGATGCAATAGCGTCCGCTGAAGAATCAAGGAAAACGTTACAGAATCATGGATCAATCCCAAAG GAAGCAATAGGCCGTGATGATGTTAATGAGGATAAACAAAACAGAGACCCAGTGGTCGATGAAAAAGGCACAGTAGGCTCTTCGGCAGAAACATTTCCAT CTAGAGAAAAGGAACCGGAAAGTTGTAGTCATGGTGGAGCGTTTGGTTCCGCAGCTAATTTACCAATGGAATTTTATCATTACTATCACGGCAGCAATAA CGACATGGGGACACTCATCGAGGTGAGAAGGACTTGGGATGCATATATAAGGCCGGGAGGAAGTCGCATACCAGGGCACTGGGTTCTGCCACCACCTCCT GCAGATGATGTGTGGGCTTCCTACCTTGTTAAGCCAAAAATGAGGATATGA
AA sequence Show only first row Show all	>Lus10000549 pacid=23161696 polypeptide=Lus10000549 locus=Lus10000549.g ID=Lus10000549.BGIv1.0 annot-version=v1.0 MNPVPFRLPPPGQQPPPWMPMLSPNSPQSSGFWENRNVHERRRELQETLVLAQEMQKELEMLAKLKHIQESGEDRDMVSDDPFSSMLSKCLGSRKIDLAK QEHLSTSAANALMLKLRTQLEPLQYAMDDATPWEEKAAAIRLSEKLLKSKRNKQWRKRKRKRDAEIHAKEHERFVQADREAEEWRARAIAKEAAQLKVES MNRIAKLKAKEERKKLESELELVLMVEKLQELRSLRIQKLKKQGHFLPEEDDKFLEKVQAAVEEEERLAQAAAETNAAKDAIASAEESRKTLQNHGSIPK EAIGRDDVNEDKQNRDPVVDEKGTVGSSAETFPSREKEPESCSHGGAFGSAANLPMEFYHYYHGSNNDMGTLIEVRRTWDAYIRPGGSRIPGHWVLPPPP ADDVWASYLVKPKMRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46200			unknown protein		Lus10000549 [exp]	0	1
AT3G50430			unknown protein		Lus10022468 [exp]	2.0	0.9007
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	3.6	0.9179
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	4.5	0.9142
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	4.9	0.9107
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	6.7	0.8929
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Lus10038072 [exp]	7.3	0.8827
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	7.9	0.8864
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	8.1	0.8867
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	9.4	0.8484
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	10.2	0.8733

Compare expression of checked genes

Lus10000549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.