Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001326 [exp] 71 / 2e-14 ND / Lus10004372 [exp] 96 / 3e-12 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) Lus10003501 [exp] 51 / 2e-07 ND / Lus10024702 [exp] 42 / 0.0005 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000550 pacid=23161693 polypeptide=Lus10000550 locus=Lus10000550.g ID=Lus10000550.BGIv1.0 annot-version=v1.0 ATGGATCAATGTGAGAATGTGAATGATCTGGTGGTTGATGTTGCACGTCTTGAGAGATTGGATATCGAGCCCGAGTTTTGGTCCATTTGGTATAGGAATG CTCAGATTCTTAAATGGTTACGAGTCGAGACTGAGTTTGAGCTCTGGTTACCCAATGCGGACATGGCGGGTTTGAGGCGTTACTCAATGTTCGGGAGGAT TTTCGAATGTCGGCCGATGAAGTTTAGCTCTTGTCCGAGTTCAAGGAGATCTCAACCAATTGTGCAATGCAGCCTCCCAAACGAGATCCTAGAGCTTCGG TATCTCAACTCCCTCACCGTCGAGGAGAAAGCCAGAACCAGCGTCCTCTCTAAAGCATGGAGATCCAAATGGCTGAGCCTCACGATTCCAGTCTCCCAAT TCTTTTTGCAAATGTTGCCGATGAAGCCTTCAACCCACTACAACATCGACAACATCATCACCCTCCTCACCTCGAGATCCATCTTGGACCAGTTCTTAGT GGCGGAGGAAAGCACCGTCTTCGCCGCACTCTTCAACCTCCCCAACTTCACCATACTGGCCCTCGCCTGCTGCTGGCTGACGCACTTCCCCTCCAACGAC GTCGTTTCTAGGGTTTGTCAACCTTACCAGAGTTGGACTATCAAAGATTTTAATTTCCACCATCCGTCTTTTATTAATCTCCAAACTTTTTTAAATGTTT ATGGAATTCCCTTACACCGATCCCCGGTGGCCGGGAAAGGAACGGCCGGCGATGGTGATGCGAAAGTGATGAAGGAAAAAGCGGCAACGACGGCTCCTTC CATGGGCGGCTTCGGCGGCGACGACGACGGCTCTCTCAACCCTCCGGCGCCTGACGACCACGACAACGAGGACAATCGAGAAGAAGAAGGCGAAGAAGAT GAAGTGGTGATTGGTATTCCGCTGCAGAGATAA
AA sequence Show only first row Show all	>Lus10000550 pacid=23161693 polypeptide=Lus10000550 locus=Lus10000550.g ID=Lus10000550.BGIv1.0 annot-version=v1.0 MDQCENVNDLVVDVARLERLDIEPEFWSIWYRNAQILKWLRVETEFELWLPNADMAGLRRYSMFGRIFECRPMKFSSCPSSRRSQPIVQCSLPNEILELR YLNSLTVEEKARTSVLSKAWRSKWLSLTIPVSQFFLQMLPMKPSTHYNIDNIITLLTSRSILDQFLVAEESTVFAALFNLPNFTILALACCWLTHFPSND VVSRVCQPYQSWTIKDFNFHHPSFINLQTFLNVYGIPLHRSPVAGKGTAGDGDAKVMKEKAATTAPSMGGFGGDDDGSLNPPAPDDHDNEDNREEEGEED EVVIGIPLQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000550 [exp]	0	1
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	1.0	1.0000
					Lus10024550 [exp]	1.4	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	1.7	1.0000
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003645 [exp]	8.7	1.0000
AT5G46795		MSP2	microspore-specific promoter ...		Lus10004566 [exp]	9.2	1.0000
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	10.5	1.0000
					Lus10005465 [exp]	12.3	1.0000
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10012337 [exp]	13.9	1.0000
					Lus10009800 [exp]	14.1	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	16.6	1.0000

Compare expression of checked genes

Lus10000550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.