Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01680 539 / 0 SEOR1, SEOb Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein AT3G01670 481 / 1e-159 SEOa sieve element occlusion a, unknown protein AT1G67790 168 / 2e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022304 [exp] 1334 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10021828 [exp] 834 / 0 AT3G01680 592 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10034567 [exp] 832 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 731 / 0 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022306 [exp] 710 / 0 AT3G01680 735 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 698 / 0 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 698 / 0 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000548 [exp] 679 / 0 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10017777 [exp] 658 / 0 AT3G01680 493 / 3e-165 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G050300 [exp] 841 / 0 AT3G01680 577 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050501 [exp] 829 / 0 AT3G01680 575 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.008G183200 [exp] 813 / 0 AT3G01680 576 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050701 [exp] 763 / 0 AT3G01680 534 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.017G071000 [exp] 751 / 0 AT3G01680 693 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340600 [exp] 748 / 0 AT3G01680 746 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340300 [exp] 746 / 0 AT3G01680 718 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340400 [exp] 746 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340200 [exp] 744 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340500 [exp] 743 / 0 AT3G01680 730 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11594 [flax] [poplar] Med28 Mediator complex subunit 28
Representative CDS sequence Show only first row Show all	>Lus10000551 pacid=23161688 polypeptide=Lus10000551 locus=Lus10000551.g ID=Lus10000551.BGIv1.0 annot-version=v1.0 ATGTCCTTCAGGCTTACCCCGGCCAGAATGCAGAGAAAGTTCAAGGGCGACCGCCTCATATTCACAAACTCTGATGATGCCGCAATGATGAAGCAACTTG AGTCAACCCATTATCCCGATGGAGTAGAATTTGATGTCAAACCTATTCTTCTTATCGTTGAGGACATCTTTCTTCATGCCAATAACCCAACTTTAGCATC AACTGTTAGCCCGGGCACTGAAGGTCACGTTGAAGCTTTGTTGGCGGACCAAACCCTGCAAGCCAGCACGATGGAGTTGCTCGAATCTTTAGCCTTTGTG ATTGATCGAGTTGCTAGCGAGATGTCCTGCACATGCTTTGGTGGTAAGGATCCACACGGTTCTGCAATGGCGATGCTGAAAATGCTTGCCAACTTCTCGT GGGATGCAAAGTTGGTAATAGTATTAGCAGCATTTGCCATGAACTATGGAGAGTTCTGGCTCATTGCACAAAATTACACCTCGAATCAACTAGCCAAAGC AGTGGCCATCCTCAACCAATTACCTGAAATCTTGGAGAAATCTAATTCACAGATGCCTCTGTTTGATGCTGTCAGAAATCTCATTAAACCGATGTTAGAC ATTGGCAAGTGTATCATTAAGTTAAAGGAGCTGCCATCTGAGTTTATTACTTCTGATGTTCCAGCATTATCTATGGCCATGTCTCATATACCCATTGCTG TCTACTGGATAGTTAGAAGTATTGTAGCATGTGCATCACAGATGACCGGTCTCATAGGGCAAGGGCATGGTGATTTTGAGGAAGTATCTGATCAGATTGT TGGTTGCAGACATTTGGTGGCAACCACAGAAGCTTGGGAGCTGTCAAGCTTGGATGAGAAGAAATTTCTCCAGTCGTATCAGAACCTTATTCACTTGTCT GAGACCATGCAAATTGACAACATGAAGATTCTCAAGGCATTGATTTACGCGAAGGATGATCTGCAGCCCCTTGTTGATGGTGCCAGCAAGAAGAGGCTTA TGGTTAGTCAATGGCAGTTTCACTTAGATGTTCTGCGGAAGAAAAATGTGCTGCTGCTTATATCAAGCCTTGACATCCTGCAAGAAGAGCTTGCTATTCT TGAGCAGATATACAACGAATCCCGTGTAGACCCCACGAGACGAGATGTCCAGTATGAGGTTGTCTGGCTCCCGATTGTAGATCCGGCCATCCCATGGACA GAGATGAAGCAGAAGCAGTTTGAGAGTTTGCAGGCAACCATGCATTGGTATTCAGTGCACCACCCTTCGATAATAAACCATGCTGCGATCAAGTTCATCA AGGAAGTATGGAACTTTGGAGAGAAGACTATTCTTGTGGTGTTAGATCCTCAAGGACAGGTTGCTAGCCCCAATGCCCTACACATGATGTGGATTTGGGG GAGCGCAGCATTCCCTTTCACCACTTCTAGGGAGGAAAGCTTGTGGAAGGAAGAGACTTGGAGGCTTGAATTATTAGTTGACGGCATTGATCCAATGATT TTGCAATGGATGTCAGAGGATAAGTACATCTGTCTTTACGGGGGTGAGGATATGGAGTGGATTCATAAGTTCACCAGTGTGCTACGCGCTGCTGCAAATG CGGCAGGCATTTCCCTGGAAATGGCCTACGTGGGGAAAAGCAACCCGAAAGAACGAGTTAGAAAGAACATATCGATGATAACAGCTGATAATCTGAGTTA CTGTTGGCAAGAGTTGACATCAATCTGGTACTTCTGGATTAGGATCGAGAGCATGTGGCACTCGAAGAACCAGCTGCAGAGAACGGTTGACAATGACCCG ATAATGCAGGAGATCATGACGTTTCTCAGCTATGATGGCAGTGAAGACGGATGGGCGATTCTCTGCAGAGGATCAGGAGAAATGGTGAGAGCCAAAGGTA GCACCTTCGTAACTTGCTTGACTGATTTCACGTCCTGGGAAAGCCAAGTCCAGCTGATGGGTTTCCTGCCAGCACTGAAACAGCATCTCATGGAGCTTCA CACTCCGCATCACTGCAACCGTCTTGTACTTCCTGGAACTTCAGGAACTGCACCAGAAAGAGTGGTGTGCTCGGAGTGTGGCCGTAGCATGGAGAGATTC ATTATGTATCAGTGCTGTGATGAGTGA
AA sequence Show only first row Show all	>Lus10000551 pacid=23161688 polypeptide=Lus10000551 locus=Lus10000551.g ID=Lus10000551.BGIv1.0 annot-version=v1.0 MSFRLTPARMQRKFKGDRLIFTNSDDAAMMKQLESTHYPDGVEFDVKPILLIVEDIFLHANNPTLASTVSPGTEGHVEALLADQTLQASTMELLESLAFV IDRVASEMSCTCFGGKDPHGSAMAMLKMLANFSWDAKLVIVLAAFAMNYGEFWLIAQNYTSNQLAKAVAILNQLPEILEKSNSQMPLFDAVRNLIKPMLD IGKCIIKLKELPSEFITSDVPALSMAMSHIPIAVYWIVRSIVACASQMTGLIGQGHGDFEEVSDQIVGCRHLVATTEAWELSSLDEKKFLQSYQNLIHLS ETMQIDNMKILKALIYAKDDLQPLVDGASKKRLMVSQWQFHLDVLRKKNVLLLISSLDILQEELAILEQIYNESRVDPTRRDVQYEVVWLPIVDPAIPWT EMKQKQFESLQATMHWYSVHHPSIINHAAIKFIKEVWNFGEKTILVVLDPQGQVASPNALHMMWIWGSAAFPFTTSREESLWKEETWRLELLVDGIDPMI LQWMSEDKYICLYGGEDMEWIHKFTSVLRAAANAAGISLEMAYVGKSNPKERVRKNISMITADNLSYCWQELTSIWYFWIRIESMWHSKNQLQRTVDNDP IMQEIMTFLSYDGSEDGWAILCRGSGEMVRAKGSTFVTCLTDFTSWESQVQLMGFLPALKQHLMELHTPHHCNRLVLPGTSGTAPERVVCSECGRSMERF IMYQCCDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000551 [exp]	0	1
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10037846 [exp]	11.7	0.6641
AT2G34540			unknown protein		Lus10042827 [exp]	11.7	0.7117
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	13.8	0.6674
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	18.7	0.6484
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	21.0	0.6499
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10038319 [exp]	24.5	0.6594
AT3G13600			calmodulin-binding family prot...		Lus10025173 [exp]	30.0	0.6483
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10003499 [exp]	45.9	0.5590
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Lus10011319 [exp]	49.0	0.5755
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10011320 [exp]	55.9	0.6345

Compare expression of checked genes

Lus10000551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.