Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23340 594 / 0 CKL10 casein kinase I-like 10 (.1) AT4G14340 577 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT4G28540 571 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G03930 570 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 560 / 0 CKL7 casein kinase I-like 7 (.1) AT5G43320 556 / 0 CKL8 casein kinase I-like 8 (.1) AT1G04440 553 / 0 CKL13 casein kinase like 13 (.1) AT1G72710 518 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 515 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 510 / 9e-180 CKL12 casein kinase I-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014661 [exp] 760 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 703 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10042570 [exp] 695 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 602 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10011812 [exp] 599 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10033913 [exp] 583 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10024916 [exp] 575 / 0 AT4G14340 640 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10022908 [exp] 542 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10027628 [exp] 519 / 0 AT4G26100 702 / 0.0 casein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070400 [exp] 608 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 601 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 600 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.002G036000 [exp] 585 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.005G226900 [exp] 583 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.003G043500 [exp] 531 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 527 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 520 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 518 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 480 / 4e-168 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000553 pacid=23145681 polypeptide=Lus10000553 locus=Lus10000553.g ID=Lus10000553.BGIv1.0 annot-version=v1.0 ATGGATCATCTTGTCGGTGGGAAATTCAAACTCGGCCGGAAGATTGGCAGCGGATCTTTTGGGGAGCTATATATCGCTGTTAATGTGCAGACAGGAGAAG AAGTTGGTGTCAAGCTGGAGCCTGTGAAGACAAAACATCCCCAGCTACAGTATGAGTCGAAAATTTACATGATTCTCCAAGGGGGGATTGATTGCCCTGG TGCAGCTGGGATTCCTGAGCTCAAGTGGTATGGTGCTGAAGGTGACTACAATATAATGGCCATAGACCTTCTAGGCCCCAGCCTAGAAGACCTGTTCAAT TACTGCAACCGGAAATTATCTCTGAAGACGGTCTTGATGCTTGCAGATCAGTTGATTAACAGAGTTGAGTATATGCATTCAAGGGGTTTCCTTCACCGTG ATATAAAGCCTGACAACTTTTTAATGGGGCTCGCACGCAAAGCCAATCAGGTGTATGTTATTGACTATGGACTGGCAAAGAAGTATAGGGATCTTCAAAC TCATAAGCACATACCATACAGGGAAAACAAAAATCTCACAGGCACAGCTAGATATGCTAGTGTTAACACTCATATGGGAGTTGAACAAAGTAGAAGAGAC GACTTAGAATCCCTTGGTTATGTGCTCATGTATTTCCTAAGGGGAAGCCTTCCATGGCAGGGTCTCAAGGCAGGAACCAAAACGCAGAAATACGACAGAA TCAATGAGAAGAAGATGCTAACTCCTATCGAGGTTCTTTGCAAGTCATATCCGTCAGAGTTCACTTCATACTTCCATTATTGTAGATCCTTACGGTTCGA AGACAAACCTGATTATGCATATTTAAAAAGGCTGTACCGAGACCTTTTCGTGCGCGAAGGCTATCAGTTTGATTACATATTTGACTGGACTATATTGAAG TATCCTCAAATAGGCTCCACTTCTAGGCATCGGGCCGGTGTAAAATCAGGAACAAAACCACAAACAACTGGCGAAAAGCCATCAGAGACTCGCGAAAGAT CGTCTCCGGGTGCAGATGCTTTAGGCAGAAGGAGTAGTACCCCCGGTACCGGAAATCGTGAGAGATCAAAGCACAAGCAGGCAGAAGATAGATCATCTTC CAAGGACAATCGATCTGATGTAGAAAAAAGCAGCAGTCGGCCATCTTCCTCCCGCCACGCATCTAAGCGAGCTGTTGCTTCGTCAAGCAGGCTAAGCTCA TCAAATGTAGGGAGCGATAGTCGATCGAGCTGGCTCTTCTCCAACAACAGCAGCCGTCTCTCGACTACTCACAGAATCCATTCCGGGTCTGATACCAAAG GGAGTGGTGCATCGGGGTCCCACCACCGTGGCGCATCTGCTCGAGACGATCAGCTTCGAAGCAGCTTCGAGAACCTTGCCATTGACGCAGAGAGGAGGAG GCGATGA
AA sequence Show only first row Show all	>Lus10000553 pacid=23145681 polypeptide=Lus10000553 locus=Lus10000553.g ID=Lus10000553.BGIv1.0 annot-version=v1.0 MDHLVGGKFKLGRKIGSGSFGELYIAVNVQTGEEVGVKLEPVKTKHPQLQYESKIYMILQGGIDCPGAAGIPELKWYGAEGDYNIMAIDLLGPSLEDLFN YCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLARKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHMGVEQSRRD DLESLGYVLMYFLRGSLPWQGLKAGTKTQKYDRINEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYAYLKRLYRDLFVREGYQFDYIFDWTILK YPQIGSTSRHRAGVKSGTKPQTTGEKPSETRERSSPGADALGRRSSTPGTGNRERSKHKQAEDRSSSKDNRSDVEKSSSRPSSSRHASKRAVASSSRLSS SNVGSDSRSSWLFSNNSSRLSTTHRIHSGSDTKGSGASGSHHRGASARDDQLRSSFENLAIDAERRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	0	1
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	1.0	0.8810
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	1.4	0.8768
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	2.0	0.8631
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	2.4	0.8635
AT3G26950			unknown protein		Lus10032012 [exp]	3.5	0.7962
AT1G67390			F-box family protein (.1)		Lus10029083 [exp]	3.7	0.7891
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	3.9	0.8605
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	5.9	0.8338
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	6.0	0.8538
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	7.1	0.8109

Compare expression of checked genes

Lus10000553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.